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Created with Raphaël 2.2.021Aug25Jul243Jun10May24Apr1526Mar1516Feb8322Jan16157Dec28Nov221713988Jun11May1018Apr21Mar2128Feb24232120191514739Jan4313Oct7Sep10Jun8331May25242318179Apr725Mar2092124Feb73220Dec1598718Nov8Oct76424Sep221310632131Aug242319181612119427Jul222197228Jun242317230May619Apr1814131026Mar191817412Feb3Jan28Dec201530Nov29272319865430Oct2716151230Sep291031Aug30282711431Jul1716865111Jun1052129May2625242212873229Apr27262221191413121143130Mar29feat: initialize conda version binny setup [ci skip]imp3_202408_v01imp3_202408_v01Update requirements.txt to match extensionsmulti_sample_docsmulti_sample_docsUpdate requirements.txt (typo)Update requirements.txt with sphinxUpdate .readthedocs.yaml to add requirementsrequirements, try to add myst-parserUpdate conf.py according to https://github.com/executablebooks/MyST-Parser/issues/556Update .readthedocs.yamlAdd read the docs config fileImplement assembly annotation with custom Bakta versionimp3_202406_v01imp3_202406_v01[ci skip]imp3_202405_v01imp3_202405_v01[ci skip]imp3_202403_v01imp3_202403_v01Merge branch 'multi_sample_docs' of https://gitlab.lcsb.uni.lu/IMP/imp3 into multi_sample_docsindex + walkthroughCommit[ci skip][ci skip]imp3_202402_v02imp3_202402_v02Updated imp stepsUpdate dependencies and environment configurationsAllow keeping rRNAs in preprocessed MT read filesSet up initial rRNA filter toggle setupprint some things for testingupdated multiimp,prerequ and added uniluMore docsUpdated Docs files to .md files[ci skip]multi_sample_im…multi_sample_imp_test[ci skip][ci skip][ci skip][ci skip][ci skip]multi_sample_impmulti_sample_impantiSMASH scriptsantiSMASH6antiSMASH6antiSMASH scripts[ci skip][ci skip]binning_rework_…binning_rework_v013[ci skip][ci skip]Update READMEbinning_rework_…binning_rework_v012Change (hopefully) all archiving to be done only at the very endMove/Disable archiving to prevent problems during multi-step runs