Merge branch 'develop' into 'master'

Regular merge of develop

See merge request !58

.gitignore

+env/.jekyll-cache/
 *.aux
 *.log
 *.out

.gitlab-ci.yml

-image: ruby:2.5
+# In case something goes horribly wrong, you can fall back to `image: ruby:2.5`
+image: git-r3lab.uni.lu:4567/r3/docker/jekyll-lcsb:1.0
 
 variables:
   JEKYLL_ENV: production
@@ -6,7 +7,7 @@ variables:
 before_script:
   - apt-get -qq update
   - apt-get install -y -qq git-lfs
-  - bundle install && bundle update
+  - gem install bundler:2.0.2 && bundle install
 
 pages:
   stage: deploy

Gemfile

@@ -7,15 +7,12 @@ source "https://rubygems.org"
 #
 #     bundle exec jekyll serve
 #
-# This will help ensure the proper Jekyll version is running.
-# Happy Jekylling!
-gem "jekyll", "~> 3.8.5"
-gem "bundler", "> 1.16.1"
 
-# This is the default theme for new Jekyll sites. You may change this to anything you like.
+gem "jekyll", "~> 4.0"
+gem "bundler", "> 2.0"
+
 gem "minima", "~> 2.5"
-gem 'jekyll-theme-primer', '~> 0.5.3'
-gem 'jekyll-theme-lcsb-default', '~> 0.2.23', :git => "https://git-r3lab.uni.lu/core-services/jekyll-theme-lcsb-default.git", :branch => "master"
+gem 'jekyll-theme-lcsb-default', '~> 0.3'
 
 # If you want to use GitHub Pages, remove the "gem "jekyll"" above and
 # uncomment the line below. To upgrade, run `bundle update github-pages`.
@@ -23,9 +20,18 @@ gem 'jekyll-theme-lcsb-default', '~> 0.2.23', :git => "https://git-r3lab.uni.lu/
 
 # If you have any plugins, put them here!
 group :jekyll_plugins do
- gem "jekyll-paginate-v2", "~> 1.7"
- gem "jekyll-feed", "~> 0.6"
- gem "jekyll-email-protect"
+ gem "jekyll-paginate-v2",
+     "~> 2",
+     :git => "https://github.com/sverrirs/jekyll-paginate-v2.git"
+
+ gem "jekyll-feed",
+     "~> 0.6"
+
+ gem 'jekyll-theme-lcsb-frozen-components',
+     '~> 0.0.1',
+     :git => "https://git-r3lab.uni.lu/core-services/jekyll-theme-lcsb-frozen-components.git",
+     :branch => "master"
+
 end
 
 # Windows does not include zoneinfo files, so bundle the tzinfo-data gem
@@ -33,3 +39,4 @@ gem "tzinfo-data", platforms: [:mingw, :mswin, :x64_mingw, :jruby]
 
 # Performance-booster for watching directories on Windows
 gem "wdm", "~> 0.1.1" if Gem.win_platform?
+

_config.yml

@@ -54,6 +54,7 @@ theme: jekyll-theme-lcsb-default
 plugins:
   - jekyll-feed
   - jekyll-paginate-v2
+  - jekyll-theme-lcsb-frozen-components
 
 # These settings are used to display share link to howto.lcsb.uni.lu
 # The display logic itself is in the template

external/exchange-channels/duma.md

@@ -3,7 +3,16 @@
 {:toc}
 
 ## Overview
-AsperaWEB is an IBM Aspera deployment at the LCSB-University of Luxembourg. AsperaWEB supports end-to-end encrypted data transfer and can handle high data volumes e.g. several tera bytes.
+AsperaWEB is an IBM Aspera deployment at the LCSB-University of Luxembourg. AsperaWEB supports end-to-end encrypted data transfer and can handle high data volumes e.g. several tera bytes.z
+
+> **IMPORTANT NOTE:** Aspera requires UDP ports to be enabled on firewalls. 
+
+Specifically your firewall should:
+ * Allow outbound connections from the Aspera client on the TCP port (TCP/33001, by default, when connecting to a Windows server, or on another non-default port for other server operating systems).
+ * Allow outbound connections from the Aspera client on the fasp UDP port (33001, by default).
+ * If you have a local firewall on your server (like Windows Firewall), verify that it is not blocking your SSH and fasp transfer ports (e.g. TCP/UDP 33001).
+
+Detailed information on how to configure firewalls when working with Aspera is given [here](https://download.asperasoft.com/download/docs/p2p/3.5.1/p2p_admin_win/webhelp/dita/configuring_the_firewall.html).
 
 ## Obtaining a AsperaWEB access link
 
@@ -35,7 +44,9 @@ In the following steps we provide instructions on how to use AsperaWEB web inter
 
 	* close the installer, the Aspera Connect should try to open - *depending on your Operating System you may be asked if you are sure to open it* -
 
-	* the prompt should disapears
+	* the prompt should disappear
+	
+	* restart your browser
 
 
 3. The **access link** page will display a **File Browser** section. Depending on the settings per access link, users can create or delete folders in the File Browser and upload and/or download data.<br/>