Merge branch 'mk-shorten-publication-shortcuts' into 'master'

shorten the publication shortcuts

See merge request !472

generator @ 5aa7f6c3

-Subproject commit f12e847f61856f4817359e4911d8ad4daf16f264
+Subproject commit 5aa7f6c360ff7cbe822d988fd59ca43cccf3a196

assets/js/box_hider.js

@@ -24,7 +24,7 @@ window.boxHider = (function() {
     function GetSelectedBoxElement(id) {
         var allBoxesArray = GetAllBoxElementsArray();
         // note: handbook and lab are actually grouped sections
-        if (id.startsWith('handbook') || id.startsWith('lab') || id.startsWith('qms')) {
+        if (id.startsWith('handbook') || id.startsWith('lab') || id.startsWith('qms') || id.startsWith('publication')) {
             return true;
         } else {
             var element = document.getElementById(id);
@@ -104,6 +104,14 @@ window.boxHider = (function() {
                     ShowElement(box);
                 }
             });
+        } else if (boxId.startsWith('publication')) {
+            allBoxes.map(function(box) {
+                if (!box.id.startsWith('publication')) {
+                    HideElement(box);
+                } else {
+                    ShowElement(box);
+                }
+            });
         } else {
             allBoxes.map(function(box) {
                 if (box != selectedBox) {

cards.md

@@ -146,12 +146,17 @@ order: -1
 	<div class="index-box noborderbox" id="publication-card">
 		<h3>Publication</h3>
 		<ul>
-			<li><a href="{{ 'external/publication/publish-repo' | relative_url }}">Publish a repository</a></li>
-			<li><a href="{{ 'external/publication/add-gitignore' | relative_url }}">Add a .gitignore to your repository</a></li>
 			<li><a href="{{ 'external/publication/orcid' | relative_url }}">Obtain an ORCID</a></li>
-			<li><a href="{{ 'external/publication/publishInBiotools' | relative_url }}">Publishing a tool in *bio.tools*</a></li>
 			<li><a href="{{ 'external/publication/phdThesisTemplate' | relative_url }}">LaTeX template for a doctoral thesis at University of Luxembourg</a></li>
 			<li><a href="{{ 'external/publication/10WaysImproveEnglish' | relative_url }}">10 ways to improve your English</a></li>
 		</ul>
 	</div>
+	<div class="index-box noborderbox" id="publication-code-card">
+		<h3>Publication: Publishing code and programs</h3>
+		<ul>
+			<li><a href="{{ 'external/publication-code/publish-repo' | relative_url }}">Publish a repository</a></li>
+			<li><a href="{{ 'external/publication-code/add-gitignore' | relative_url }}">Add a .gitignore to your repository</a></li>
+			<li><a href="{{ 'external/publication-code/publishInBiotools' | relative_url }}">Publishing a tool in *bio.tools*</a></li>
+		</ul>
+	</div>
 </div><br><center><a href="{{ '/' | relative_url }}">go back</a></center><br><center><a href="{{ '/cards' | relative_url }}">Overview of all HowTo cards</a></center>
\ No newline at end of file

external/publication/add-gitignore/add-gitignore.md → external/publication-code/add-gitignore/add-gitignore.md

 ---
 card_order: 700
 layout: page
-permalink: /external/publication/add-gitignore/
+permalink: /external/publication-code/add-gitignore/
 shortcut: publication:add-gitignore
 redirect_from:
+  - /cards/publication-code:add-gitignore
+  - /external/cards/publication-code:add-gitignore
+  - /publication-code/add-gitignore
+  - /external/external/publication-code/add-gitignore/
+legacy_from:
   - /cards/publication:add-gitignore
   - /external/cards/publication:add-gitignore
   - /publication/add-gitignore

external/publication/publish-repo/publish-repo.md → external/publication-code/publish-repo/publish-repo.md

 ---
 card_order: 600
 layout: page
-permalink: /external/publication/publish-repo/
+permalink: /external/publication-code/publish-repo/
 shortcut: publication:publish-repo
 redirect_from:
+  - /cards/publication-code:publish-repo
+  - /external/cards/publication-code:publish-repo
+  - /publication-code/publish-repo
+  - /external/external/publication-code/publish-repo/
+legacy_from:
   - /cards/publication:publish-repo
   - /external/cards/publication:publish-repo
   - /publication/publish-repo
@@ -18,4 +23,4 @@ In order to change the visibility of the repository, you can do so by browsing t
 
 There, you can set the visibility to `Public`. It is important to note that the group must be public in order to change visibility of the repository.
 
-Remember to follow the [LCSB policy regarding code development](https://howto.lcsb.uni.lu/?qms:LCSB-POL-BIC-07). In case of questions, please do not hesitate to contact the [R3 team](mailto:lcsb-r3@uni.lu).
\ No newline at end of file
+Remember to follow the [LCSB policy regarding code development](https://howto.lcsb.uni.lu/?qms:LCSB-POL-BIC-07). In case of questions, please do not hesitate to contact the [R3 team](mailto:lcsb-r3@uni.lu).

external/publication/publishInBiotools/publishInBiotools.md → external/publication-code/publishInBiotools/publishInBiotools.md

 ---
 card_order: 800
 layout: page
-permalink: /external/publication/publishInBiotools/
+permalink: /external/publication-code/publishInBiotools/
 shortcut: publication:publishInBiotools
+redirect_from:
+  - /cards/publication-code:publishInBiotools
+  - /external/cards/publication-code:publishInBiotools
+  - /publication-code/publishInBiotools
+  - /external/external/publication-code/publishInBiotools/
 redirect_from:
   - /cards/publication:publishInBiotools
   - /external/cards/publication:publishInBiotools