Makefile

README.md

docs/conf.py

docs/content/tools/closest.rst

docs/content/tools/intersect.rst

src/bedtools.cpp

src/closestFile/closestMain.cpp

src/intersectFile/intersectMain.cpp

src/spacingFile/Makefile

src/spacingFile/SpacingFile.cpp

src/spacingFile/SpacingFile.h

src/spacingFile/spacingMain.cpp

src/split/Makefile

src/split/splitBed.cpp

src/split/splitBed.h

src/split/splitBedMain.cpp

src/utils/Contexts/ContextBase.cpp

src/utils/Contexts/ContextBase.h

src/utils/Contexts/ContextSpacing.cpp

src/utils/Contexts/ContextSpacing.h