src/coverageBed/Makefile

src/coverageBed/coverageBed.cpp

src/coverageBed/coverageBed.h

src/coverageBed/coverageMain.cpp

src/intersectBed/Makefile

src/intersectBed/intersectBed.cpp

src/intersectBed/intersectBed.h

src/intersectBed/intersectMain.cpp

src/utils/BamTools/BamAncillary.cpp

src/utils/bedFile/bedFile.cpp

src/utils/bedFile/bedFile.h