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R3
legacy
bedtools2
Commits
3e35f222
Commit
3e35f222
authored
16 years ago
by
Aaron Quinlan
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Updated README to acknowledge Galaxy
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29e2c10a
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@@ -12,16 +12,22 @@ intersecting genomic features in the UCSC Genome Browser BED format.
===Acknowledgments===
1. Jim Kent, UCSC.
1.
Jim Kent, UCSC.
Much of the code herein is taken from Jim Kent's BED processing code.
I am grateful for his elegant genome binning algorithm and therefore use it extensively.
2. Michael Stromberg, Boston College.
2.
Michael Stromberg, Boston College.
I learned much of what I know about C++ style from Michael Stromberg. I was formerly a C and Perl
programmer and struggled to switch to C++. The structure of BEDTools and much of the coding style
emulates Michael's. Thanks Mike.
3. Ira Hall.
3. Galaxy.
I had been using Galaxy for months prior to writing these tools. Much of the functionality is based on what is
available on the Galaxy website. I merely found it too slow to do several iterations of queries on a website,
especially with large sequencing datasets. Regardless, I am grateful to the Galaxy team for creating such a
useful site that is rapidly approaching ubiquity.
4. Ira Hall.
Discussion between Ira and I are largely the motivation for these tools. We are frequently tracking
down impromptu ideas and these tools were largely designed to facilitate tangents.
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