src/closestBed/closestBed.cpp

src/coverageBed/coverageBed.cpp

src/fastaFromBed/fastaFromBed.cpp

src/intersectBed/intersectBed.cpp

src/maskFastaFromBed/maskFastaFromBed.cpp

src/maskFastaFromBed/maskFastaFromBed.h

src/peIntersectBed/peIntersectBed.cpp

src/peIntersectBed/peIntersectMain.cpp

src/shuffleBed/Makefile

src/shuffleBed/shuffleBed.cpp

src/shuffleBed/shuffleBed.h

src/shuffleBed/shuffleBedMain.cpp

src/slopBed/Makefile

src/slopBed/slopBed.cpp

src/slopBed/slopBed.h

src/slopBed/slopBedMain.cpp

src/sortBed/sortBed.cpp

src/subtractBed/subtractBed.cpp

src/utils/bedFile/bedFile.cpp

src/utils/bedFilePE/bedFilePE.cpp