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Commit 88595a33 authored by Aaron's avatar Aaron
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Tweaked closestBed help for -D

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......@@ -173,7 +173,7 @@ void ShowHelp(void) {
cerr << "\t-D\t" << "Like -d, report the closest feature in B, and its distance to A" << endl;
cerr << "\t\tas an extra column. Unlike -d, use negative distances to report" << endl;
cerr << "\t\tupstream features. You must specify which orientation defines \"upstream\"." << endl;
cerr << "\t\tThe options are:" << endl;
cerr << "\t\tThe options are (default = ref):" << endl;
cerr << "\t\t- \"ref\" Report distance with respect to the reference genome. " << endl;
cerr << "\t\t B features with a lower (start, stop) are upstream" << endl;
cerr << "\t\t- \"a\" Report distance with respect to A." << endl;
......
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