src/annotateBed/annotateBed.h

src/annotateBed/annotateMain.cpp

src/bamToBed/bamToBed.cpp

src/bed12ToBed6/bed12ToBed6.cpp

src/bedToBam/bedToBam.cpp

src/bedToIgv/bedToIgv.cpp

src/closestBed/closestBed.cpp

src/closestBed/closestBed.h

src/closestBed/closestMain.cpp

src/complementBed/complementBed.cpp

src/complementBed/complementBed.h

src/complementBed/complementMain.cpp

src/coverageBed/coverageBed.cpp

src/coverageBed/coverageBed.h

src/coverageBed/coverageMain.cpp

src/fastaFromBed/fastaFromBed.cpp

src/fastaFromBed/fastaFromBed.h

src/fastaFromBed/fastaFromBedMain.cpp

src/fjoin/fjoin.cpp

src/fjoin/fjoin.h