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R3
legacy
bedtools2
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e0fdbbf2
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e0fdbbf2
authored
10 years ago
by
arq5x
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README.md
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README.md
docs/content/tools/closest.rst
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bedtools - a swiss army knife for genome arithmetic
===================================================
**Current version**
: 2.2
1.1
**Current version**
: 2.2
2.0
Note
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docs/content/tools/closest.rst
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@@ -9,6 +9,15 @@ genomic distance from the start or end of A) feature in B. For example, one migh
is the closest gene to a significant GWAS polymorphism. Note that **closestBed** will report an
overlapping feature as the closest---that is, it does not restrict to closest *non-overlapping* feature.
.. important::
As of version 2.22.0, the `closest` tool can accept multiple files for
the `-b` option. This allows one to identify the closest intervals between a single
query (`-a`) file and multiple database files (`-b`) at once! This functionality
now requires that all input files be sorted by chromosome and start coordinate
in an identical manner (e.g., `sort -k1,1 -k2,2n`).
==========================================================================
5.6.1 Usage and option summary
==========================================================================
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