docs/conf.py

docs/content/tools/closest.rst

src/utils/RecordOutputMgr/RecordOutputMgr.cpp

src/utils/version/version_release.txt

src/windowMaker/windowMaker.cpp

src/windowMaker/windowMaker.h

src/windowMaker/windowMakerMain.cpp

test/makewindows/input.bed

test/makewindows/test-makewindows.sh