Updated includes to ease compilation on other systems.

	1.  Thanks to Loyal Goff at CSAIL/Broad for help identifying misssing includes.
	2.  Updated README to reflect this.

README

@@ -35,10 +35,13 @@ available on the Galaxy website.  I merely found it too slow to do several itera
 especially with large sequencing datasets.  Regardless, I am grateful to the Galaxy team for creating such a
 useful site that is rapidly approaching ubiquity.
 
-4.  Ira Hall.
+4.  Ira Hall, UVa.
 Discussion between Ira and I are largely the motivation for these tools.  We are frequently tracking 
 down impromptu ideas and these tools were largely designed to facilitate tangents.
 
+5. Loyal Goff, CSAIL, Broad.
+Many thanks to Loyal for his assistance in making BED Tools "compilable" on the SUSE platform.  I appreciate your help and patience.
+
 
 ===Requests===
 I would be grateful to learn of any problems or suggestions you have for improving these tools.

src/complementBed/Makefile

 CXX = g++
 CXXFLAGS = -O3
 LDFLAGS = 
+LIBFLAGS = -lc
 
 UTILITIES_DIR = ../utils/
 OBJ_DIR = ../../obj/
@@ -28,7 +29,7 @@ all: $(PROGRAM)
 
 $(PROGRAM): $(BUILT_OBJECTS) $(EXT_OBJECTS)
 	@echo "  * linking $(PROGRAM)"
-	@$(CXX) $(LDFLAGS) $(CXXFLAGS) -o $(BIN_DIR)/$@ $^ $(LIBS)
+	@$(CXX) $(LIBFLAGS) $(CXXFLAGS) -o $(BIN_DIR)/$@ $^ $(LIBS)
 
 $(BUILT_OBJECTS): $(SOURCES)
 	@echo "  * compiling" $(*F).cpp

src/complementBed/complementBed.h

@@ -5,7 +5,8 @@
 #include <list>
 #include <iostream>
 #include <fstream>
-#include <limits>
+#include <limits.h>
+#include <stdlib.h>
 
 using namespace std;
 

src/coverageBed/coverageBed.h

-#ifndef GRAPHBED_H
-#define GRAPHBED_H
+#ifndef	COVERAGEBED_H
+#define COVERAGEBED_H
 
 #include "bedFile.h"
 #include <vector>
@@ -7,6 +7,7 @@
 #include <list>
 #include <iostream>
 #include <fstream>
+#include <stdlib.h>
 
 using namespace std;
 
@@ -42,4 +43,4 @@ private:
 	BedFile *bedA, *bedB;
 
 };
-#endif /* GRAPHBED_H */
+#endif /* COVERAGEBED_H */

src/utils/bedFile/bedFile.h

@@ -8,6 +8,7 @@
 #include <fstream>
 #include <sstream>
 #include <cstring>
+#include <algorithm>
 
 using namespace std;
 

src/utils/sequenceUtilities/sequenceUtils.h

@@ -2,6 +2,8 @@
 #define SEQUENCEUTILS_H
 
 #include <string>
+#include <algorithm>
+
 using namespace std;
 
 // Performs an in-place sequence reversal