Improvements to coverageBed
1. Added the -hist option (credit to Jose Bras). 2. Substantially improved the speed by using a depth iterator instead of copying the depth map for each feature in B when computing coverage.
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- src/coverageBed/coverageBed.cpp 63 additions, 42 deletionssrc/coverageBed/coverageBed.cpp
- src/coverageBed/coverageBed.h 5 additions, 3 deletionssrc/coverageBed/coverageBed.h
- src/coverageBed/coverageMain.cpp 11 additions, 3 deletionssrc/coverageBed/coverageMain.cpp
- src/utils/bedFile/bedFile.h 0 additions, 1 deletionsrc/utils/bedFile/bedFile.h
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