start of test for -exons arg

f7933016 · Brent Pedersen · fb664dd0 · f7933016 · f7933016 · f7933016
Commit f7933016 authored 12 years ago by Brent Pedersen
--- a/test/fastaFromBed/blocks.bed
+++ b/test/fastaFromBed/blocks.bed
+chr1	0	40	three_blocks_match	0	+	0	0	0	3	2,10,10,	5,16,36,
--- a/test/fastaFromBed/t.bed
+++ b/test/fastaFromBed/t.bed
--- a/test/fastaFromBed/t.fa
+++ b/test/fastaFromBed/t.fa
+>chr1
+aaaaaaaaaa
+cccccccccc
+tttttttttt
+gggggggggg
+aaaaaaaaaa
--- a/test/fastaFromBed/test.sh
+++ b/test/fastaFromBed/test.sh
+echo $'chr1\t1\t10' | ./bin/bedtools getfasta -fi test/fastaFromBed/t.fa -bed stdin -fo t.txt
+
+./bin/bedtools getfasta -exons -fi test/fastaFromBed/t.fa -bed test/fastaFromBed/blocks.bed -fo stdout