Initial BAM support for pairToBed
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- bin/pairToBed 0 additions, 0 deletionsbin/pairToBed
- obj/BamWriter.o 0 additions, 0 deletionsobj/BamWriter.o
- obj/bedFilePE.o 0 additions, 0 deletionsobj/bedFilePE.o
- obj/pairToBed.o 0 additions, 0 deletionsobj/pairToBed.o
- obj/pairToBedMain.o 0 additions, 0 deletionsobj/pairToBedMain.o
- src/intersectBed/intersectBed.cpp 1 addition, 1 deletionsrc/intersectBed/intersectBed.cpp
- src/intersectBed/test 0 additions, 0 deletionssrc/intersectBed/test
- src/pairToBed/Makefile 5 additions, 4 deletionssrc/pairToBed/Makefile
- src/pairToBed/a.bedpe 1 addition, 0 deletionssrc/pairToBed/a.bedpe
- src/pairToBed/b.bed 1 addition, 0 deletionssrc/pairToBed/b.bed
- src/pairToBed/hmec.50.txt.pairs.conc.bam 1 addition, 0 deletionssrc/pairToBed/hmec.50.txt.pairs.conc.bam
- src/pairToBed/pairToBed.cpp 332 additions, 165 deletionssrc/pairToBed/pairToBed.cpp
- src/pairToBed/pairToBed.h 44 additions, 6 deletionssrc/pairToBed/pairToBed.h
- src/pairToBed/pairToBedMain.cpp 79 additions, 47 deletionssrc/pairToBed/pairToBedMain.cpp
- src/pairToBed/simplerepeats.mm8.bed 1 addition, 0 deletionssrc/pairToBed/simplerepeats.mm8.bed
- src/pairToBed/test.bam 0 additions, 0 deletionssrc/pairToBed/test.bam
- src/pairToPair/pairToPairMain.cpp 0 additions, 16 deletionssrc/pairToPair/pairToPairMain.cpp
- src/utils/BamTools/BamWriter.cpp 1 addition, 1 deletionsrc/utils/BamTools/BamWriter.cpp
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