Commits · 4983727f0487349825510c10809f3af0a49adfce · R3 / legacy / bedtools2

Dec 31, 2014
- Fixed bug164, closest runs slower with -id · 4983727f
  Neil Kindlon authored 10 years ago
  
  4983727f
Dec 23, 2014
- Fixed bug157: ties not prevented by -iu/-id · effc83ef
  Neil Kindlon authored 10 years ago
  
  effc83ef
Dec 20, 2014
- Removed test debugging files from repository · 26618897
  Neil Kindlon authored 10 years ago
  
  26618897
- Removed large closest tests from repository · e94c559e
  Neil Kindlon authored 10 years ago
  
  e94c559e
- More sort order unit tests for chromsweep and closest; bug fixes and minor enhancements · 4422985d
  Neil Kindlon authored 10 years ago
  
  4422985d
Dec 18, 2014
- Forgot a new test file for closest · 2a2ae0cd
  Neil Kindlon authored 10 years ago
  
  2a2ae0cd
- Merge branch 'master' of https://github.com/nkindlon/bedtools2 · cf21ba58
  Neil Kindlon authored 10 years ago
  
  cf21ba58
- Bug fixes for closest and bug 155 · 436e6f4e
  Neil Kindlon authored 10 years ago
  
  436e6f4e
Dec 07, 2014
- changes for request #125: return non-zero on errors. · 50ae7528
  Neil Kindlon authored 10 years ago
  
  50ae7528
- Added tleonardi's changes for bug 150 re: overlap bases with -split in intersect · b70b6caf
  Neil Kindlon authored 10 years ago
  
  b70b6caf
- Fix for bug 150, closest hangs with -d and tie first mode · d819c40d
  Neil Kindlon authored 10 years ago
  
  d819c40d
Dec 06, 2014
- Cleaned up error message for sort order detection of missing chrom · a2cacdf7
  Neil Kindlon authored 10 years ago
  
  a2cacdf7
- Updated jaccard unit test to reflect chromsweep change · b561a2f4
  Neil Kindlon authored 10 years ago
  
  b561a2f4
- Correcting merge conflicts in NewChromsweep.h and .cpp · 758cd6a1
  Neil Kindlon authored 10 years ago
  
  758cd6a1
- Detect differently ordered files in chromsweep and closest. Merged Fisher changes. · 4c7213c5
  Neil Kindlon authored 10 years ago
  
  4c7213c5
Dec 02, 2014
- update NewChromSweep signature to support fisher. May have conflicts with... · 6ae90161
  arq5x authored 10 years ago
  
  update NewChromSweep signature to support fisher. May have conflicts with @nkindlon's upcoming changes. Will resolve then.
  6ae90161
- Merge branch 'brentp-fisher-include' · 205db6a6
  arq5x authored 10 years ago
  
  205db6a6
- merge conflicts. integrate @brentp's nice improvments to fisher. · cf911bfa
  arq5x authored 10 years ago
  
  cf911bfa
Dec 01, 2014
- Merge pull request #149 from daler/master · fc7d185b
  Aaron Quinlan authored 10 years ago
  
  fix formatting of fisher table
  fc7d185b
Nov 28, 2014
- fix formatting of fisher table · 89805de6
  daler authored 10 years ago
  
  89805de6
Nov 26, 2014
- tuning, testing and docs for fisher · ed4e8a9a
  Brent Pedersen authored 10 years ago
  
  ed4e8a9a
Nov 25, 2014
- add -m option to merge intervals · 548bcae0
  Brent Pedersen authored 10 years ago
  
  548bcae0
- prevent < 0 in n21 · 3594e98a
  Brent Pedersen authored 10 years ago
  
  3594e98a
- scripts for comparing to shuffled · c3ab3d1e
  Brent Pedersen authored 10 years ago
  
  c3ab3d1e
- change fisher to use numbers of intervals rather than bases of overlap · d6544e0e
  Brent Pedersen authored 10 years ago
  
  d6544e0e
Nov 24, 2014
- reorganize contingency table · a277bba0
  Brent Pedersen authored 10 years ago
  
  a277bba0
Nov 20, 2014
- Merge branch 'master' of https://github.com/arq5x/bedtools2 · 24803222
  arq5x authored 10 years ago
  
  24803222
- better tutorial · 39cec401
  arq5x authored 10 years ago
  
  39cec401
- Merge pull request #146 from nkindlon/master · 4c6a312b
  Aaron Quinlan authored 10 years ago
  
  added -prec option, default 10. Updated unit tests for merge, map, jacca...
  4c6a312b
- restore TOC · f542c998
  arq5x authored 10 years ago
  
  f542c998
Nov 19, 2014
- added tutorial · a52fee4b
  arq5x authored 10 years ago
  
  a52fee4b
- added -prec option, default 10. Updated unit tests for merge, map, jaccard.... · 3b5afaf7
  Neil Kindlon authored 10 years ago
  
  added -prec option, default 10. Updated unit tests for merge, map, jaccard. Accept stdin by default in merge.
  3b5afaf7
- add tutorial to docs · 418e5d97
  arq5x authored 10 years ago
  
  418e5d97
Nov 18, 2014
- Merge branch 'master' of https://github.com/arq5x/bedtools2 · 296866f3
  arq5x authored 10 years ago
  
  296866f3
- restore defaukt precision in groupby · a60ae746
  arq5x authored 10 years ago
  
  a60ae746
Nov 17, 2014
- Merge pull request #143 from arjanvandervelde/patch-1 · 5926946c
  Aaron Quinlan authored 10 years ago
  
  changed compare function to have "unsigned int"
  5926946c
- changed compare function to have "unsigned int" · 5f91a5b9
  Arjan van der Velde authored 10 years ago
  
  in order to make this compile with clang on FreeBSD 10.
  5f91a5b9
Nov 14, 2014
- Merge pull request #142 from wookietreiber/wip-make-install-target · 0292f311
  Aaron Quinlan authored 10 years ago
  
  adds make install target
  0292f311
- adds make install target · e7379ae8
  Christian Krause authored 10 years ago
  
  e7379ae8
Nov 11, 2014
- update docs version · 91928cf2
  arq5x authored 10 years ago
  
  91928cf2