Commits · 6dfec96499124df3e51da52c679801e961ef3dd8 · R3 / legacy / bedtools2

Dec 13, 2011
- to for compat. thx to @jmarshall · 6dfec964
  Aaron authored 13 years ago
  
  6dfec964
- remove superfluous *.o · d8a9ae92
  Aaron authored 13 years ago
  
  d8a9ae92
- remove superfluous *.o · 03e0a08e
  Aaron authored 13 years ago
  
  03e0a08e
- gussy · 7ce88623
  Aaron authored 13 years ago
  
  7ce88623
- gussy · 5c7d55bc
  Aaron authored 13 years ago
  
  5c7d55bc
- gussy · 833f165a
  Aaron authored 13 years ago
  
  833f165a
- acknowledge heng li. · bd34e000
  Aaron authored 13 years ago
  
  bd34e000
Dec 12, 2011
- tweaked menu. · 4fe3ea9f
  Aaron authored 13 years ago
  
  4fe3ea9f
- tweaked menu. · c46b9d4c
  Aaron authored 13 years ago
  
  c46b9d4c
- New svn/git/samtools - like bedtools interface. · d615e94a
  Aaron authored 13 years ago
  
  d615e94a
- Removed most version.h includes from sub-tools. · b7cb9955
  Aaron authored 13 years ago
  
  b7cb9955
- First pass at new, consolidated CLI. · c2c28746
  Aaron authored 13 years ago
  
  c2c28746
Dec 08, 2011
- preliminary · 0ef7f2dd
  Aaron authored 13 years ago
  
  0ef7f2dd
- makefile tweak · f98028d5
  Aaron authored 13 years ago
  
  f98028d5
- Comment fix. · 9dda8b7f
  Aaron authored 13 years ago
  
  9dda8b7f
- Further nullBed tweaking. · 5c3d96db
  Aaron authored 13 years ago
  
  5c3d96db
- return true on BLANK · 600a99ca
  Aaron authored 13 years ago
  
  600a99ca
- Removed nullBed nonsense. · 4406c1ef
  Aaron authored 13 years ago
  
  4406c1ef
- bamToBed -bedpe now handles singletons. · b3ba4b98
  Aaron authored 13 years ago
  
  b3ba4b98
- Removed need for nullBed. clear() otherFields in GetNextBed(). · 77dbc361
  Aaron authored 13 years ago
  
  77dbc361
- Added -header to sortBed · e8909692
  Aaron authored 13 years ago
  
  e8909692
- Use new GetNextBed() interface. Redux. · 696f8a89
  Aaron authored 13 years ago
  
  696f8a89
- Use new GetNextBed() interface. · 520ccaae
  Aaron authored 13 years ago
  
  520ccaae
Dec 07, 2011
- rename tool to acvoid conflicts. s/overlap/getOverlap · dfb191ce
  Aaron authored 13 years ago
  
  dfb191ce
- Makefile aborts on first error. · 9821cf1f
  Aaron authored 13 years ago
  
  9821cf1f
Nov 29, 2011
- Add'l comments. · 705c2aaa
  Aaron authored 13 years ago
  
  705c2aaa
- Comments for header logic. · 250d1546
  Aaron authored 13 years ago
  
  250d1546
- force ^chrom ^track and ^browser headers to only occur on the first line. · d8d64134
  Aaron authored 13 years ago
  
  d8d64134
- Allow headers to start with "chrom" · 44775518
  Aaron authored 13 years ago
  
  44775518
- lineNum is now tracked privately. · b4b12ca5
  Aaron authored 13 years ago
  
  b4b12ca5
- Merge branch 'read_write_headers' · 8d6cc8dc
  Aaron authored 13 years ago
  
  8d6cc8dc
- Added unstaged files. · f909a024
  Aaron authored 13 years ago
  
  f909a024
- Added -header to intersect, window, closest, slop, flank. · 32cb6584
  Aaron authored 13 years ago
  
  32cb6584
Nov 25, 2011
- Fiex off-by-one in linksBed. · 5b293cfd
  Aaron authored 13 years ago
  
  5b293cfd
Nov 17, 2011
- Fixed getBamBlocks() · 3491dd54
  Aaron authored 13 years ago
  
  3491dd54
- Added intervals option to tagBam. · f82d2d22
  Aaron authored 13 years ago
  
  f82d2d22
Nov 16, 2011
- Makefile tweak. · a43e8f68
  Aaron authored 13 years ago
  
  a43e8f68
- Added bedpeToBam Makefile · 8d6cb613
  Aaron authored 13 years ago
  
  8d6cb613
- Changes for CSHL course. · a0846e8f
  Aaron authored 13 years ago
  
  a0846e8f
Nov 09, 2011
- Added methods to store and report file headers upon request. · 79c6a2ff
  Aaron authored 13 years ago
  
  79c6a2ff