Commits · 761d4a58c738e61bac1ce2662cc52684755e94cb · R3 / legacy / bedtools2

Dec 30, 2011
- added cluster tool. both cluster and merge require sorted files for efficiency. · 761d4a58
  Aaron authored 13 years ago
  
  761d4a58
- Relax pairing req's for bamtobed and pairtobed · c045c254
  Aaron authored 13 years ago
  
  c045c254
Dec 29, 2011
- Missing include. · 4f74da50
  Aaron authored 13 years ago
  
  4f74da50
- added version to subcommands · f8d62267
  Aaron authored 13 years ago
  
  f8d62267
- Warn only when requested chrom not in FASTA file. · 53feac20
  Aaron authored 13 years ago
  
  53feac20
- Added makewindows sub-command · fbb65994
  Aaron authored 13 years ago
  
  fbb65994
- Handle mutiple UCSC header lines and mid-file headers/comments. · 350cb3ff
  Aaron authored 13 years ago
  
  350cb3ff
Dec 21, 2011
- uBG and mIB use new Point class. · 8850247c
  Aaron authored 13 years ago
  
  8850247c
Dec 18, 2011
- Change shuffleBed defaults. · bdea2f1d
  Aaron authored 13 years ago
  
  bdea2f1d
- Makefile mod. · 741c5f9e
  Aaron authored 13 years ago
  
  741c5f9e
- updated to bamtools 2.0 · f029b236
  Aaron authored 13 years ago
  
  f029b236
- wipe away bamtools · 63ebf2c6
  Aaron authored 13 years ago
  
  63ebf2c6
- shuffleBed now weights by chrom size by def. · 956dc0f3
  Aaron authored 13 years ago
  
  956dc0f3
Dec 13, 2011
- banner, include. · 166bee78
  Aaron authored 13 years ago
  
  166bee78
- newline at end of file · 66e0b8d6
  Aaron authored 13 years ago
  
  66e0b8d6
- Improvements to CLI. · d71acebe
  Aaron authored 13 years ago
  
  d71acebe
- fix · 80f127bb
  Aaron authored 13 years ago
  
  80f127bb
- Uses C++ string comp. Thx to @jmarshall. · e55f9ecc
  Aaron authored 13 years ago
  
  e55f9ecc
- to for compat. thx to @jmarshall · 6dfec964
  Aaron authored 13 years ago
  
  6dfec964
- remove superfluous *.o · d8a9ae92
  Aaron authored 13 years ago
  
  d8a9ae92
- remove superfluous *.o · 03e0a08e
  Aaron authored 13 years ago
  
  03e0a08e
- gussy · 7ce88623
  Aaron authored 13 years ago
  
  7ce88623
- gussy · 5c7d55bc
  Aaron authored 13 years ago
  
  5c7d55bc
- gussy · 833f165a
  Aaron authored 13 years ago
  
  833f165a
- acknowledge heng li. · bd34e000
  Aaron authored 13 years ago
  
  bd34e000
Dec 12, 2011
- tweaked menu. · 4fe3ea9f
  Aaron authored 13 years ago
  
  4fe3ea9f
- tweaked menu. · c46b9d4c
  Aaron authored 13 years ago
  
  c46b9d4c
- New svn/git/samtools - like bedtools interface. · d615e94a
  Aaron authored 13 years ago
  
  d615e94a
- Removed most version.h includes from sub-tools. · b7cb9955
  Aaron authored 13 years ago
  
  b7cb9955
- First pass at new, consolidated CLI. · c2c28746
  Aaron authored 13 years ago
  
  c2c28746
Dec 08, 2011
- preliminary · 0ef7f2dd
  Aaron authored 13 years ago
  
  0ef7f2dd
- makefile tweak · f98028d5
  Aaron authored 13 years ago
  
  f98028d5
- Comment fix. · 9dda8b7f
  Aaron authored 13 years ago
  
  9dda8b7f
- Further nullBed tweaking. · 5c3d96db
  Aaron authored 13 years ago
  
  5c3d96db
- return true on BLANK · 600a99ca
  Aaron authored 13 years ago
  
  600a99ca
- Removed nullBed nonsense. · 4406c1ef
  Aaron authored 13 years ago
  
  4406c1ef
- bamToBed -bedpe now handles singletons. · b3ba4b98
  Aaron authored 13 years ago
  
  b3ba4b98
- Removed need for nullBed. clear() otherFields in GetNextBed(). · 77dbc361
  Aaron authored 13 years ago
  
  77dbc361
- Added -header to sortBed · e8909692
  Aaron authored 13 years ago
  
  e8909692
- Use new GetNextBed() interface. Redux. · 696f8a89
  Aaron authored 13 years ago
  
  696f8a89