Commits · 8d5fa9ca2e367726af51f0b19d42de543e53decc · R3 / legacy / bedtools2

Jan 05, 2014
- ask travis to auto-run unit tests. · 8d5fa9ca
  arq5x authored 11 years ago
  
  8d5fa9ca
Jan 04, 2014
- tweak travis config · c1e45d3b
  arq5x authored 11 years ago
  
  c1e45d3b
- add travis config · a5a8afdb
  arq5x authored 11 years ago
  
  a5a8afdb
Jan 03, 2014
- Update README.rst · c856bd0e
  Aaron Quinlan authored 11 years ago
  
  c856bd0e
- Merge pull request #14 from nkindlon/master · 333b85c0
  Aaron Quinlan authored 11 years ago
  
  Added fix for Bam files with empty headers. Added test for this to unit ...
  333b85c0
- Added fix for Bam files with empty headers. Added test for this to unit test. · a16562f4
  nkindlon authored 11 years ago
  
  a16562f4
- [DOC] cleanup docs to facilitate man page creation. · 6d5a7587
  arq5x authored 11 years ago
  
  6d5a7587
Jan 02, 2014
- [DOC] fix docs typos · e5e5d751
  arq5x authored 11 years ago
  
  e5e5d751
Dec 19, 2013
- Merge pull request #7 from nkindlon/master · fe6b3098
  Aaron Quinlan authored 11 years ago
  
  Added -nobuf option and definition to intersect help menu.
  fe6b3098
- Added -nobuf option and definition to intersect help menu. · b2f01dc8
  nkindlon authored 11 years ago
  
  b2f01dc8
- Merge pull request #6 from nkindlon/master · 465f72d8
  Aaron Quinlan authored 11 years ago
  
  Changed input stream buffer to only 1Kb to improve performance for small...
  465f72d8
- Added -nobuf option, and changed flush to occur after every record if -nobuf is set. · 930ddf38
  nkindlon authored 11 years ago
  
  930ddf38
Dec 18, 2013
- Changed outbuf size constant to 16384 from 16386, which was a mistake. · bb49512d
  nkindlon authored 11 years ago
  
  bb49512d
- Corrected comment and constant for MAIN_BUF_READ_SIZE. · 284148c0
  nkindlon authored 11 years ago
  
  284148c0
- Changed input stream buffer to only 1Kb to improve performance for small files. · fba95089
  nkindlon authored 11 years ago
  
  fba95089
Dec 17, 2013
- Setting Release-Version v2.18.1 · 5173bf69
  arq5x authored 11 years ago
  
  v2.18.1
  
  5173bf69
- [BUG] fix compilation errors on CLANG and with pre-installed bamtools libs. · 16b8247c
  arq5x authored 11 years ago
  
  16b8247c
- Merge pull request #5 from nkindlon/master · 0524411f
  Aaron Quinlan authored 11 years ago
  
  Changed main Makefile to put LDFLAGS after -lbamtools. Fixes customized ...
  0524411f
Dec 16, 2013
- Changed main Makefile to put LDFLAGS after -lbamtools. Fixes customized... · 074a146c
  nkindlon authored 11 years ago
  
  Changed main Makefile to put LDFLAGS after -lbamtools. Fixes customized Bamtools link error when Bamtools already defined in /usr/lib.
  074a146c
- Merge pull request #4 from nkindlon/master · eea39090
  Aaron Quinlan authored 11 years ago
  
  ifdef'd out DualQueue and removed usages of it to fix compiler errors wi...
  eea39090
- ifdef'd out DualQueue and removed usages of it to fix compiler errors with clang on Mac OS X · a12d9422
  nkindlon authored 11 years ago
  
  a12d9422
Dec 15, 2013
- add citations · f7ec24d4
  arq5x authored 11 years ago
  
  f7ec24d4
Dec 13, 2013
- [DOC] fix subtract's option list: · d3f1ae59
  arq5x authored 11 years ago
  
  d3f1ae59
- Setting Release-Version v2.18.0 · 2a70433c
  arq5x authored 11 years ago
  
  v2.18.0
  
  2a70433c
- [DOC] update release history and subtract's docs · 7e3b7172
  arq5x authored 11 years ago
  
  7e3b7172
- [DOC] tweak intersect docs · e5c8310a
  arq5x authored 11 years ago
  
  e5c8310a
- Setting Release-Version v2.18.0 · c96d7c80
  arq5x authored 11 years ago
  
  c96d7c80
- tweak logo · d0ab2c5e
  arq5x authored 11 years ago
  
  d0ab2c5e
- bump docs to 2.18.0 · 5bb48e57
  arq5x authored 11 years ago
  
  5bb48e57
- Setting Release-Version 2.18.0 · ca3bc353
  arq5x authored 11 years ago
  
  ca3bc353
- Setting Release-Version v2.18.0 · 6a659fe2
  arq5x authored 11 years ago
  
  6a659fe2
- Setting Release-Version v2.18.0 · e34b8f2e
  arq5x authored 11 years ago
  
  e34b8f2e
- typo · 67d4d402
  arq5x authored 11 years ago
  
  67d4d402
- update README · 22b79456
  arq5x authored 11 years ago
  
  22b79456
- update README · 70a9df83
  arq5x authored 11 years ago
  
  70a9df83
- update README · cd659359
  arq5x authored 11 years ago
  
  cd659359
- [DOC] docs for the reldist tool. · 75ef783b
  arq5x authored 11 years ago
  
  75ef783b
Dec 12, 2013
- [DOC] tweak intersect usage doc · 532b3fdd
  arq5x authored 11 years ago
  
  532b3fdd
- [DOC] add docs for the jaccard tool. · a176d9bc
  arq5x authored 11 years ago
  
  a176d9bc
Dec 11, 2013
- [DOC] update docs for new -g option in intersect for specifying custom sort order. · 57e54626
  arq5x authored 11 years ago
  
  57e54626