Commits · 9ff9543d78aca949fed2a7922cd87f5776718009 · R3 / legacy / bedtools2

Aug 24, 2012
- remove comment · 9ff9543d
  Aaron authored 12 years ago
  
  9ff9543d
- Merge pull request #25 from brentp/groupby-columns · 0783e741
  Aaron Quinlan authored 12 years ago
  
  Groupby columns specified like cut (but retaining order)
  0783e741
- add tests for groupby · 2e766670
  Brent Pedersen authored 12 years ago
  
  2e766670
- use TokenizeColumns in groupBy and add lineFileUtilities as dependency to Makefile · 64acb9d1
  Brent Pedersen authored 12 years ago
  
  64acb9d1
- add TokenizeColumns function · 69c11d6e
  Brent Pedersen authored 12 years ago
  
  69c11d6e
Aug 23, 2012
- extraneous tab for windowbed -c · 56af1979
  Aaron authored 12 years ago
  
  56af1979
Aug 14, 2012
- try reqs file · 1c3ae6a7
  Aaron authored 12 years ago
  
  1c3ae6a7
- add pybedtools req. for docs · ef32b49e
  Aaron authored 12 years ago
  
  ef32b49e
- add plot_directive · 18ea2e8f
  Aaron authored 12 years ago
  
  18ea2e8f
- no need for setup.py? · 37460947
  Aaron authored 12 years ago
  
  37460947
- try Mock() · 9186eb14
  Aaron authored 12 years ago
  
  9186eb14
- try Mock() · 93236181
  Aaron authored 12 years ago
  
  93236181
Aug 09, 2012
- menu typo · f6bd8f4c
  Aaron authored 12 years ago
  
  f6bd8f4c
- added -split, -s, -S, -f, -r support to multicov · aea85198
  Aaron authored 12 years ago
  
  aea85198
Jul 24, 2012
- typo in closest help · 254aa1dd
  Aaron authored 12 years ago
  
  254aa1dd
- fix flanks for zerlonegth features. · 206cc5d1
  Aaron authored 12 years ago
  
  206cc5d1
- use correct Makefile · 992c47cc
  Aaron authored 12 years ago
  
  992c47cc
- numpy for rtd · a673d34d
  Aaron authored 12 years ago
  
  a673d34d
- numpy for rtd · b93289fe
  Aaron authored 12 years ago
  
  b93289fe
- numpy for rtd · 1b06247c
  Aaron authored 12 years ago
  
  1b06247c
- numpy for rtd · 8fea4d78
  Aaron authored 12 years ago
  
  8fea4d78
- reorg for rtd · 7a1d31a1
  Aaron authored 12 years ago
  
  7a1d31a1
- add setup.py. for venv · 608e10c2
  Aaron authored 12 years ago
  
  608e10c2
- add pip reqs. in hopes of mpl support on rtd · d3a9970f
  Aaron authored 12 years ago
  
  d3a9970f
- add pip reqs. in hopes of mpl support on rtd · fc4259f6
  Aaron authored 12 years ago
  
  fc4259f6
- trying to suppor mpl · ca360873
  Aaron authored 12 years ago
  
  ca360873
- trying to suppor mpl · 9908e459
  Aaron authored 12 years ago
  
  9908e459
- remove redundancy in conf.py · d9dd17f1
  Aaron authored 12 years ago
  
  d9dd17f1
- add plotting to conf.py · ff358b36
  Aaron authored 12 years ago
  
  ff358b36
- intersect docs · ded4cb40
  Aaron authored 12 years ago
  
  ded4cb40
- include html · 1cb82b33
  Aaron authored 12 years ago
  
  1cb82b33
- added docs/_build. working on plots via @daler · a79c662d
  Aaron authored 12 years ago
  
  a79c662d
Jul 21, 2012
- first cut at sphinx-based docs · 356dc38a
  Aaron authored 12 years ago
  
  356dc38a
- slightly better randomization · ebd31372
  Aaron authored 12 years ago
  
  ebd31372
- reset each bedpe · 956e384b
  Aaron authored 12 years ago
  
  956e384b
- no need for flanks to the left of chrom.start · 71f9e102
  Aaron authored 12 years ago
  
  71f9e102
Jul 20, 2012
- added shuffle logic for BEDPE · f991233c
  Aaron authored 12 years ago
  
  f991233c
Jul 18, 2012
- added -A option to subtract entire interval when any overlap · 1830530c
  Aaron authored 12 years ago
  
  1830530c
Jul 17, 2012
- Allow user to force closest interval to have different name (-N) · e10e26ff
  Aaron authored 12 years ago
  
  e10e26ff
Jul 04, 2012
- allow \# in chrom name, just not at beg. of line (header) · ebd9d50e
  Aaron authored 12 years ago
  
  ebd9d50e