Commits · b2f01dc801f42b4d0372a3f0806472168c772956 · R3 / legacy / bedtools2

Dec 19, 2013
- Added -nobuf option and definition to intersect help menu. · b2f01dc8
  nkindlon authored 11 years ago
  
  b2f01dc8
- Added -nobuf option, and changed flush to occur after every record if -nobuf is set. · 930ddf38
  nkindlon authored 11 years ago
  
  930ddf38
Dec 18, 2013
- Changed outbuf size constant to 16384 from 16386, which was a mistake. · bb49512d
  nkindlon authored 11 years ago
  
  bb49512d
- Corrected comment and constant for MAIN_BUF_READ_SIZE. · 284148c0
  nkindlon authored 11 years ago
  
  284148c0
- Changed input stream buffer to only 1Kb to improve performance for small files. · fba95089
  nkindlon authored 11 years ago
  
  fba95089
Dec 16, 2013
- Changed main Makefile to put LDFLAGS after -lbamtools. Fixes customized... · 074a146c
  nkindlon authored 11 years ago
  
  Changed main Makefile to put LDFLAGS after -lbamtools. Fixes customized Bamtools link error when Bamtools already defined in /usr/lib.
  074a146c
- Merge pull request #4 from nkindlon/master · eea39090
  Aaron Quinlan authored 11 years ago
  
  ifdef'd out DualQueue and removed usages of it to fix compiler errors wi...
  eea39090
- ifdef'd out DualQueue and removed usages of it to fix compiler errors with clang on Mac OS X · a12d9422
  nkindlon authored 11 years ago
  
  a12d9422
Dec 15, 2013
- add citations · f7ec24d4
  arq5x authored 11 years ago
  
  f7ec24d4
Dec 13, 2013
- [DOC] fix subtract's option list: · d3f1ae59
  arq5x authored 11 years ago
  
  d3f1ae59
- Setting Release-Version v2.18.0 · 2a70433c
  arq5x authored 11 years ago
  
  v2.18.0
  
  2a70433c
- [DOC] update release history and subtract's docs · 7e3b7172
  arq5x authored 11 years ago
  
  7e3b7172
- [DOC] tweak intersect docs · e5c8310a
  arq5x authored 11 years ago
  
  e5c8310a
- Setting Release-Version v2.18.0 · c96d7c80
  arq5x authored 11 years ago
  
  c96d7c80
- tweak logo · d0ab2c5e
  arq5x authored 11 years ago
  
  d0ab2c5e
- bump docs to 2.18.0 · 5bb48e57
  arq5x authored 11 years ago
  
  5bb48e57
- Setting Release-Version 2.18.0 · ca3bc353
  arq5x authored 11 years ago
  
  ca3bc353
- Setting Release-Version v2.18.0 · 6a659fe2
  arq5x authored 11 years ago
  
  6a659fe2
- Setting Release-Version v2.18.0 · e34b8f2e
  arq5x authored 11 years ago
  
  e34b8f2e
- typo · 67d4d402
  arq5x authored 11 years ago
  
  67d4d402
- update README · 22b79456
  arq5x authored 11 years ago
  
  22b79456
- update README · 70a9df83
  arq5x authored 11 years ago
  
  70a9df83
- update README · cd659359
  arq5x authored 11 years ago
  
  cd659359
- [DOC] docs for the reldist tool. · 75ef783b
  arq5x authored 11 years ago
  
  75ef783b
Dec 12, 2013
- [DOC] tweak intersect usage doc · 532b3fdd
  arq5x authored 11 years ago
  
  532b3fdd
- [DOC] add docs for the jaccard tool. · a176d9bc
  arq5x authored 11 years ago
  
  a176d9bc
Dec 11, 2013
- [DOC] update docs for new -g option in intersect for specifying custom sort order. · 57e54626
  arq5x authored 11 years ago
  
  57e54626
- [ENH] intergrate merge changes from @kcha. · 1b810b62
  arq5x authored 11 years ago
  
  1b810b62
- [BUG] case typo that OSX tolerated. · 17c265ec
  arq5x authored 11 years ago
  
  17c265ec
- [BUG] case typo that OSX tolerated. · 4018162b
  arq5x authored 11 years ago
  
  4018162b
Dec 09, 2013
- [TST] cleanup sample test · db638be7
  arq5x authored 11 years ago
  
  db638be7
- sync docs · 76d0b9ab
  arq5x authored 11 years ago
  
  76d0b9ab
- [ENH] add -allowBeyondChromEnd feature to shuffle. · 5b55adb5
  arq5x authored 11 years ago
  
  5b55adb5
- Add sample to main menu · 0199576f
  arq5x authored 11 years ago
  
  0199576f
- [TST] tests for reldist · 8085664c
  arq5x authored 11 years ago
  
  8085664c
- [TST] resolve platform-specific issues with GNU cut. · fedbb693
  arq5x authored 11 years ago
  
  fedbb693
Dec 06, 2013
- Actually needed j1.bed in test/intersect. · b94d9f5e
  nkindlon authored 11 years ago
  
  b94d9f5e
- Fixed sample and intersect unit tests; minor code changes; new repository. · 55c53173
  nkindlon authored 11 years ago
  
  55c53173
Dec 05, 2013
- Added unit tests for sampleFile program. · 5014f649
  nkindlon authored 11 years ago
  
  5014f649
Nov 26, 2013
- Added sample sub-program with needed changes to main, Makefiles, Context,... · b1aa9ab7
  nkindlon authored 11 years ago
  
  Added sample sub-program with needed changes to main, Makefiles, Context, FileRecordMgr, and RecordOutputMgr.
  b1aa9ab7