Commits · master · R3 / legacy / bedtools2

Jul 15, 2015
- Merge pull request #249 from gtamazian/test-fixes · 462318f5
  Aaron Quinlan authored 9 years ago
  
  Test fixes
  462318f5
- settle on uint32_t signature for QuickString. Resolves #267 and #271? · b47dbefc
  arq5x authored 9 years ago
  
  b47dbefc
- t push origin masterMerge branch 'wookietreiber-wip-issue-206' · 86bce5cb
  arq5x authored 9 years ago
  
  86bce5cb
- resolve conflict · 2d7b5503
  arq5x authored 9 years ago
  
  2d7b5503
- Merge pull request #265 from nkindlon/master · b1e3d8de
  Aaron Quinlan authored 9 years ago
  
  1st check-in: Converted groupby to PFM
  b1e3d8de
Jul 14, 2015
- Merge branch 'master' into wip-issue-206 · 833bd238
  Christian Krause authored 9 years ago
  
  833bd238
Jun 29, 2015
- New unit tests (with bug fixes) for groupby · 53ecd3c1
  Neil Kindlon authored 9 years ago
  
  53ecd3c1
- 1st check-in: Converted groupby to PFM · d28d1fc8
  Neil Kindlon authored 9 years ago
  
  d28d1fc8
Jun 24, 2015
- Merge pull request #261 from nkindlon/master · b0bc5b7e
  Aaron Quinlan authored 9 years ago
  
  Converted complement to PFM with merge-based approach, sorted input e…
  b0bc5b7e
Jun 23, 2015
- Fixed bug262: stranded map with BedPlus · f5927cf6
  Neil Kindlon authored 9 years ago
  
  f5927cf6
- Update README.md · aa11ef9d
  Aaron Quinlan authored 9 years ago
  
  aa11ef9d
- Update README.md · 598edfca
  Aaron Quinlan authored 9 years ago
  
  598edfca
Jun 22, 2015
- Fixed 44: race condition in bgzip for vcf files. · b6f8ff74
  Neil Kindlon authored 9 years ago
  
  b6f8ff74
Jun 18, 2015
- Converted complement to PFM with merge-based approach, sorted input enforced · 85818904
  Neil Kindlon authored 9 years ago
  
  85818904
Jun 09, 2015
- Merge pull request #247 from nkindlon/master · e1993b57
  Aaron Quinlan authored 9 years ago
  
  Changed vector copies to references in sortBed.cpp, added unit tests
  e1993b57
Jun 06, 2015
- Missing file bug223_d.vcf for intersect unit test · 16d4db0d
  Neil Kindlon authored 9 years ago
  
  16d4db0d
- Fixed Bug 254: stranded merge of BedPlus records w/ strand. Added strand to... · 0c046ca8
  Neil Kindlon authored 9 years ago
  
  Fixed Bug 254: stranded merge of BedPlus records w/ strand. Added strand to default output for stranded merge. Added and updated unit tests.
  0c046ca8
Jun 04, 2015
- Added -mean to coverage w/ unit test · 107f803e
  Neil Kindlon authored 9 years ago
  
  107f803e
Jun 03, 2015
- Did #147: don't print usage on errors. · 45321a47
  Neil Kindlon authored 9 years ago
  
  45321a47
Jun 02, 2015
- Added distinct_sort_num and distinct_sort_num desc to VectorOps (and groupBy)... · bb139717
  Neil Kindlon authored 9 years ago
  
  Added distinct_sort_num and distinct_sort_num desc to VectorOps (and groupBy) and KeyListOps. Added -delim to groupBy.
  bb139717
- Delete temporary files after test completion · f678c7ff
  Gaik Tamazian authored 9 years ago
  
  f678c7ff
- OS X compatibility fix · 6debe57a
  Gaik Tamazian authored 9 years ago
  
  In addition to 50d8c1655f94eeb4421613b45a3b65d24ae089e2.
  6debe57a
- Test compatibility with OS X improved · 5763783a
  Gaik Tamazian authored 9 years ago
  
  5763783a
Jun 01, 2015
- Added distinct_sort_num option to VectorOps for groupBy. · 8b8a9cd5
  Neil Kindlon authored 9 years ago
  
  8b8a9cd5
- Merge remote-tracking branch 'upstream/master' · ec745749
  Neil Kindlon authored 9 years ago
  
  ec745749
May 29, 2015
- Completed #181, GFF can have extra fields. Also, SVlen in VCF takes max of... · cd012c6c
  Neil Kindlon authored 9 years ago
  
  Completed #181, GFF can have extra fields. Also, SVlen in VCF takes max of more than two numbers (as opposed to min)
  cd012c6c
May 28, 2015
- Changed vector copies to references · 69ca7e90
  Neil Kindlon authored 9 years ago
  
  69ca7e90
- typo · b3504cee
  arq5x authored 9 years ago
  
  b3504cee
- formatting · 76abaf82
  arq5x authored 9 years ago
  
  76abaf82
- Setting Release-Version v2.24.0 · d6535fc9
  arq5x authored 9 years ago
  
  v2.24.0
  
  d6535fc9
- bump docs version · b0c34daa
  arq5x authored 9 years ago
  
  b0c34daa
- update release history for 2.24.0 · 0def6000
  arq5x authored 9 years ago
  
  0def6000
- Merge pull request #245 from nkindlon/master · 9b8e84ba
  Aaron Quinlan authored 9 years ago
  
  Addressed >2 numbers in VCF SVLEN, can appear at endl w/ tab, semi-co…
  9b8e84ba
May 27, 2015
- Added extra unit test for vcf svlen - single # at end of line · 9724fbbe
  Neil Kindlon authored 9 years ago
  
  9724fbbe
- Addressed >2 numbers in VCF SVLEN, can appear at endl w/ tab, semi-colon, newline or null · ca31d1f2
  Neil Kindlon authored 9 years ago
  
  ca31d1f2
- Merge pull request #244 from nkindlon/master · 33f2bef8
  Aaron Quinlan authored 9 years ago
  
  Removed accidental copy in BinTree to fix speed
  33f2bef8
- Changed common help to remove -names, -filenames, and -sortout from all tools... · 5f0362f8
  Neil Kindlon authored 9 years ago
  
  Changed common help to remove -names, -filenames, and -sortout from all tools but intersect and closest.
  5f0362f8
- Removed accidental copy in BinTree to fix speed · 8edf2662
  Neil Kindlon authored 9 years ago
  
  8edf2662
- add note about CLI change for coverage · 76aa9d70
  arq5x authored 9 years ago
  
  76aa9d70
- update the help for coverage to reflect new role of A versus B. · 070ff0d3
  arq5x authored 9 years ago
  
  070ff0d3