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Created with Raphaël 2.2.017Apr161497525Mar2120191864128Feb27231910986532131Jan2723222120131110987543219Dec1817161513121196425Nov181413126229Oct2714119328Sep27262524231913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep28272322161513108651allow merge -d to have negative values for minimum overlap.Merge pull request #53 from nkindlon/masterMerge branch 'merge'Final unit tests for merge, including stranded merge bug fixes.Merge branch 'merge'Unit tests and bug fixes for merge releaseFixed merge conflictsMerge branch 'master' of https://github.com/nkindlon/bedtools2Merge remote-tracking branch 'upstream/master' into mergeHandling empty files with headers[TST] run shuffle tests.[ENH] all shuffle with -incl to follow data distributionMerge converted to PFM, first check-infix most filetype issues. intersect still raises error with empty files.remove extraneous header tabtweak README[DOC] add new usage examples from the wild[DOC] add new usage examples from the wildMerge pull request #48 from Debian/suggestion-for-testsuiteAccess data via a DATA variable, allowing to override the location.Call bedtools via the BT variable, allowing to override the location.just peak at first bit in isGzipFile() fix for issue46Merge pull request #47 from nkindlon/masterFixed slop bug when slop factor exceeds MAX signed int.Setting Release-Version v2.19.1v2.19.1v2.19.1Setting Release-Version v2.19.1Setting Release-Version v2.19.1[DOC] multiple ops/cols allowed in a single map run. also, speed comparo.Merge pull request #43 from nkindlon/masterFixed intersect bug so that bed query with Bam DB correctly gives bed output. Added unit test.Merge pull request #40 from theoryno3/masterMerge pull request #41 from nkindlon/masterMore unit tests, also fixed files messed up by previous merge attempt.forgot main Makefile update.Refactored KeyListOps, Context, mapFile for KeyListOps re-usability by other tools.added: mm10 mouse genomeMerge pull request #39 from nkindlon/masterCreated new KeyListOps class to replace vectorOps. Converted map tool to this.Update README.mdMerge pull request #37 from jayhesselberth/patch-1