Skip to content
Snippets Groups Projects
Select Git revision
  • brentp-fisher-include
  • jmarshall-warnings3
  • map-pfm
  • master default
  • merge-assume-stdin
  • nkindlon-master
  • nkindlon-master2
  • pfm_merge
  • v2.24.0
  • v2.23.0
  • v2.22.1
  • v2.22.0
  • v2.21.0
  • v2.20.1
  • v2.20.0
  • v2.19.1
  • v2.19.0
  • v2.18.2
  • v2.18.1
  • v2.18.0
20 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.01Sep31Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765323Dec21Nov4Oct21Sep318Aug1665425Jul232221181715146543130Jun29876May543229Apr2826221514131229Mar2322181715141210319Feb126228Jan2723191110876543130Dec29201826Nov25191816141327Oct232120191521Sep17151428Aug22Jul25Jun1529May1912116528Apr272624232221159Gzip detected by file extension. Weak, but only approach that works at this point.Need to rewind to start of file after Gzip check.Updated fastaFromBedfifo support add'lReverted the -full option in fastaFromBed. Use 06a7e24e294e06258c75 to retain it.BEDTools now supports FIFOs and named pipes. Many thanks Nate Weeks and Michael Hoffman for the suggestions.now allow "-" as well as "stdin".Added -Sm to windowBedAdded -S to subtractBedAdded -S to pairToBedAdded -S to closestBedAdded -S to annotateBedAdded -S to coverageBedAdded -S (opposite strand) logic to intersectBedAdded logic to keep dups and failed QC for multiBamCov. Thanks to Chip Stewart.GFF can't have 0-length features.Added -full to fastaFromBedCorrected start check in parseVcfLine. Thanks to Jan VogelMakefile tweakFirst cut at -scale for genomeCoverageBedcorrected a pull goofMerge branch 'master' of github.com:arq5x/bedtoolsincluded cstdlib in lineFileUtilities.h. Thanks to @dalerMerge pull request #7 from daler/masterinclude cstdlib for gcc 4.4.3Tweaks to Tokenize(), GetNextBed(), and detection of negative coordinates. Thanks to @agordon15% speedup for the tokenizer.tweak to Fasta.cppChanged version numberUpdated help messagesUpdated Makefile for 64bit BAM seeks.Latest BamTools. Commit 525fc971414d7f7b8b60Don't track BamTools/includeCleanup of bamtools directories and updated MakeNew region checks for multiBamCov. Thanks to Derek Barnett.Updated to 2.13.0.alphaUser can define their own tag type for tagBam.Moved FastaHack to the utils/ directoryCode gussyingUpdated tagBam help so that it actually works...