Skip to content
Snippets Groups Projects
Select Git revision
  • brentp-fisher-include
  • jmarshall-warnings3
  • map-pfm
  • master default
  • merge-assume-stdin
  • nkindlon-master
  • nkindlon-master2
  • pfm_merge
  • v2.24.0
  • v2.23.0
  • v2.22.1
  • v2.22.0
  • v2.21.0
  • v2.20.1
  • v2.20.0
  • v2.19.1
  • v2.19.0
  • v2.18.2
  • v2.18.1
  • v2.18.0
20 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.013Dec121196425Nov181413126229Oct2714119328Sep27262524231913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep2827232216151310865131Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765[DOC] update release history and subtract's docs[DOC] tweak intersect docsSetting Release-Version v2.18.0tweak logobump docs to 2.18.0Setting Release-Version 2.18.0Setting Release-Version v2.18.0Setting Release-Version v2.18.0typoupdate READMEupdate READMEupdate README[DOC] docs for the reldist tool.[DOC] tweak intersect usage doc[DOC] add docs for the jaccard tool.[DOC] update docs for new -g option in intersect for specifying custom sort order.[ENH] intergrate merge changes from @kcha.[BUG] case typo that OSX tolerated.[BUG] case typo that OSX tolerated.[TST] cleanup sample testsync docs[ENH] add -allowBeyondChromEnd feature to shuffle.Add sample to main menu[TST] tests for reldist[TST] resolve platform-specific issues with GNU cut.Actually needed j1.bed in test/intersect.Fixed sample and intersect unit tests; minor code changes; new repository.Added unit tests for sampleFile program.Added sample sub-program with needed changes to main, Makefiles, Context, FileRecordMgr, and RecordOutputMgr.Added unit test for unrecognized arguments.Added unit test and changed error message for empty files.New unit tests for sort order enforcement, non-existant file. Also added performance test for file input and compression types.Added 12 new tests to print header for files with large header from uncompressed files, gzip, and bgzip as file, redirect, pipe and fifo.Added more unit tests for bed, gzip, and bgzipped files with large headers from file, redirect, pipe and fifo.added unit tests and data file for sort order, genome file, and more Bam unmapped reads.Fixed a bug in BamRecord::printUnmapped, added a unit test with with data file for unmapped Bam reads.new unit tests for intersectFixed small memory leak in InputStreamMgr.Fixed test for Bam vs Bgzip to allow for empty references.Added support for Bgzip from files and stdin.