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Created with Raphaël 2.2.018Dec177652128Nov262524201918171614111097654331Oct292827159818Sep17752116Aug1526Jul2411743218Jun529May232221169876130Apr292524232217161497525Mar2120191864128Feb27231910986532131Jan2723222120131110987543219Dec1817161513121196425Nov181413126229Oct2714119328Sep27262524231913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan2928272624Fix for issue #145. -f was incorrectly set to 0.0 when using -labels, -intervals, or -names.Issue 123. Correct genomecov glyph. Thanks to @tdhock for the catch.[BUG] Fix for issue #153. makewindows -s should not be required with -b.Forgot a new test file for closestMerge branch 'master' of https://github.com/nkindlon/bedtools2Bug fixes for closest and bug 155Fix for issue #155changes for request #125: return non-zero on errors.Added tleonardi's changes for bug 150 re: overlap bases with -split in intersectFix for bug 150, closest hangs with -d and tie first modeCleaned up error message for sort order detection of missing chromUpdated jaccard unit test to reflect chromsweep changeCorrecting merge conflicts in NewChromsweep.h and .cppDetect differently ordered files in chromsweep and closest. Merged Fisher changes.Corrected error in reporting amount of overlap (issue #150)update NewChromSweep signature to support fisher. May have conflicts with @nkindlon's upcoming changes. Will resolve then.Merge branch 'brentp-fisher-include'merge conflicts. integrate @brentp's nice improvments to fisher.brentp-fisher-i…brentp-fisher-includeMerge pull request #149 from daler/masterfix formatting of fisher tabletuning, testing and docs for fisheradd -m option to merge intervalsprevent < 0 in n21scripts for comparing to shuffledchange fisher to use numbers of intervals rather than bases of overlapreorganize contingency tableMerge branch 'master' of https://github.com/arq5x/bedtools2better tutorialMerge pull request #146 from nkindlon/masterrestore TOCadded tutorialadded -prec option, default 10. Updated unit tests for merge, map, jaccard. Accept stdin by default in merge.add tutorial to docsMerge branch 'master' of https://github.com/arq5x/bedtools2restore defaukt precision in groupbyMerge pull request #143 from arjanvandervelde/patch-1changed compare function to have "unsigned int"Merge pull request #142 from wookietreiber/wip-make-install-targetadds make install targetupdate docs version