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Created with Raphaël 2.2.05Feb30Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep2827232216151310865131Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765323Dec21Nov4Oct21Sep318Aug1665425Jul232221181715146543130Jun29876May543229Apr2826221514131229Mar2322181715141210319Feb126228Jan2723191110876543130Dec29201826Nov25191816141327Oct232120191521Sep17151428Aug22Jul25Jun1529May1912116528Apr272624232221159fixed VectorOps mode and antimodefixed numbered listtypoadded general file formatting testsMention make test in READMEremove unnecessary test filesmore tests for intersectgreater control over splitting on D or N CIGAR ops.fix blocked_intervals merge conflictsMerge branch 'google_test'Fix make clean to erase bamtools objects. Thanks to John Marshall.Need HttpHeader_p.h as well.Update BamTools to avoid C++11 complicationsMakefile tweakAdded beginnings of regression testing framework.Merge pull request #15 from agordon/feature/makewindows_with_IDs1Merge pull request #14 from jakebiesinger/masterFix regression on intersectBed -wao, now reports all features from A,WindowMaker: fix bug with fixed number of windows.WindowMaker: add output ID option.Merge pull request #13 from jakebiesinger/mastertweak to help in makewindows. thanks to @agordonmake windows from ivls in bed files.tool makefiles not recompile with changes to headerrefactored intersect; better -bed support for split BAM alignmentsfixed util Makefiles to recompile when header changesfix typoadd ranlib to bamtools' makefile. thx to jphn marshallbail out early if no ivls in binadded count_distinct to groupbyBugfix: fix segfault when -t first or -t last used with -iu or -idAdd ignore options for features up- and down-stream of Abail early if not BEDs in BIN; revert to map from unordered_mapAdded isBed12 attr. and overlap fraction support for blocked intervals.Inform users that map reqs. sorted input. Update default.Inform users that merge reqs. sorted input.Fixed typo. Thanks @daler.Fixed help for groupby. Thanks @daler.First cut at BlockedIntervals class to cleanup spliced BAMs and BED12Clearer desc. of mapBed's func. programming origins