Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
B
bedtools2
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Iterations
Wiki
Requirements
External wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Model registry
Operate
Environments
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
R3
legacy
bedtools2
Graph
76abaf822649353e71c2d9dfe7d5c444390f10cd
Select Git revision
Branches
8
brentp-fisher-include
jmarshall-warnings3
map-pfm
master
default
merge-assume-stdin
nkindlon-master
nkindlon-master2
pfm_merge
Tags
12
v2.24.0
v2.23.0
v2.22.1
v2.22.0
v2.21.0
v2.20.1
v2.20.0
v2.19.1
v2.19.0
v2.18.2
v2.18.1
v2.18.0
20 results
You can move around the graph by using the arrow keys.
Begin with the selected commit
Created with Raphaël 2.2.0
15
Jul
14
29
Jun
28
24
23
22
17
8
5
4
3
2
1
29
May
28
27
26
21
19
18
16
15
14
12
11
12
8
7
4
23
Apr
20
17
13
4
30
Mar
11
5
2
25
Feb
23
22
21
17
16
13
11
5
27
Jan
26
25
20
16
11
10
9
8
7
2
1
31
Dec
30
29
22
21
19
18
17
7
6
5
2
1
28
Nov
26
25
24
20
19
18
17
16
14
11
10
9
7
6
5
4
3
31
Oct
29
28
27
15
9
8
18
Sep
17
7
5
2
1
16
Aug
15
26
Jul
24
11
7
4
3
2
18
Jun
5
29
May
23
22
21
16
9
8
7
6
1
30
Apr
29
25
24
23
22
17
16
14
9
7
5
25
Mar
21
20
19
18
6
4
1
28
Feb
27
23
19
10
9
8
6
5
3
2
1
31
Jan
27
23
22
21
20
13
11
10
9
8
7
5
4
3
2
19
Dec
18
17
16
15
13
12
11
9
6
4
25
Nov
18
14
13
12
6
2
29
Oct
27
14
11
9
3
28
Sep
27
26
25
24
23
19
13
11
10
24
Aug
23
16
15
14
13
28
Jun
27
11
30
May
30
Apr
3
2
26
Mar
21
6
3
2
1
12
Feb
3
1
29
Jan
28
27
26
25
24
16
15
14
9
27
Dec
26
19
18
16
13
12
11
9
8
25
Nov
14
5
4
3
2
31
Oct
30
29
Merge pull request #249 from gtamazian/test-fixes
master
master
settle on uint32_t signature for QuickString. Resolves #267 and #271?
t push origin masterMerge branch 'wookietreiber-wip-issue-206'
resolve conflict
Merge pull request #265 from nkindlon/master
Merge branch 'master' into wip-issue-206
New unit tests (with bug fixes) for groupby
1st check-in: Converted groupby to PFM
Merge pull request #261 from nkindlon/master
Fixed bug262: stranded map with BedPlus
Update README.md
Update README.md
Fixed 44: race condition in bgzip for vcf files.
Converted complement to PFM with merge-based approach, sorted input enforced
Merge pull request #247 from nkindlon/master
Missing file bug223_d.vcf for intersect unit test
Fixed Bug 254: stranded merge of BedPlus records w/ strand. Added strand to default output for stranded merge. Added and updated unit tests.
Added -mean to coverage w/ unit test
Did #147: don't print usage on errors.
Added distinct_sort_num and distinct_sort_num desc to VectorOps (and groupBy) and KeyListOps. Added -delim to groupBy.
Delete temporary files after test completion
OS X compatibility fix
Test compatibility with OS X improved
Added distinct_sort_num option to VectorOps for groupBy.
Merge remote-tracking branch 'upstream/master'
Completed #181, GFF can have extra fields. Also, SVlen in VCF takes max of more than two numbers (as opposed to min)
Changed vector copies to references
typo
formatting
Setting Release-Version v2.24.0
v2.24.0
v2.24.0
bump docs version
update release history for 2.24.0
Merge pull request #245 from nkindlon/master
Added extra unit test for vcf svlen - single # at end of line
Addressed >2 numbers in VCF SVLEN, can appear at endl w/ tab, semi-colon, newline or null
Merge pull request #244 from nkindlon/master
Changed common help to remove -names, -filenames, and -sortout from all tools but intersect and closest.
Removed accidental copy in BinTree to fix speed
add note about CLI change for coverage
update the help for coverage to reflect new role of A versus B.
Loading