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Created with Raphaël 2.2.023Sep1913111024Aug231615141328Jun271130May30Apr3226Mar21632112Feb3129Jan2827262524161514927Dec261918161312119825Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep2827232216151310865131Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765323Dec21Nov4Oct21Sep318Aug16654add missing include to prevent compilation errorImproved help and error msgs in Contextfixed negative coords, zero len intervals, Bed4 format errorresolved chromId problem when doing Chromsweep with BAM file sorted differently than genome file.-g (genomeFile) option now gives error if file is differently sorted than genome file.Corrected intersect showHelp segfault.added sandbox and regressTestadded more utilsadded other util directoriesforgot intersectFileFirst commit for new 2.18-alpha branch.[BUG] -split, -tag and BED6 output was not implemented.Merge pull request #82 from wac/patch-1Merge pull request #80 from daler/patch-1Update slop.rstMerge pull request #81 from daler/patch-2Update quick-start.rstUpdate quick-start.rstMerge pull request #79 from nachocab/patch-1Change the actual default delim for merge (it's ";" not ",")[DOC] add docs for the -noOverlapping option in shuffle.Merge branch 'master' of github.com:arq5x/bedtools[ENH] add -mate1 option for -bedpe output in bamtobedMerge pull request #76 from brentp/no-overlapENH: shuffle intervals to non-overlapping locations.Merge pull request #75 from lbthrice/patch-2Update merge.rst[DOC] update FAQ regarding zlib compilation issues.Merge branch 'master' of github.com:arq5x/bedtoolsreport which chrom can't be found in -inclMerge pull request #64 from alexpenson/patch-1Update advanced-usage.rstMerge pull request #62 from xubeisi/patch-1Update coverage.rstMerge pull request #60 from lbthrice/patch-1Update sort.rstMerge pull request #59 from cdelzinga/patch-1Update coverage.rstMerge pull request #58 from dvanic/patch-1removed duplicate description of -s option