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Created with Raphaël 2.2.025Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep2827232216151310865131Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765323Dec21Nov4Oct21Sep318Aug1665425Jul232221181715146543130Jun29876May543229Apr2826221514131229Mar2322181715141210319Feb126remove commented codeallow -incl and -exclfirst cut at allowing -incl and -excl[ENH] Make it more clear than -abam supplants -a[ENH] improve desc. of what -wb does.[BUG] closest -s fails to report when only opp. strand B ivls exists.[BUG] non-redundant cluster ids in stranded (-s) mode.[OMM] add reldist source...[NEW] Added new "reldist" tool to measure the distribution of relative distances between two files[BUG] fix jaccard regression test.Merge branch 'master' of github.com:arq5x/bedtoolsMerge pull request #29 from charles-plessy/masterAllow overriding BT to test bedtools from other paths.Call bedtools via a shell variable called BT.update HISTORYSetting Release-Version v2.17.0jaccard testsadded new jaccard tool. see PMID: 22693437add "first" and "last" as new groupby options80 charrefactor VCF auto-detection80 char width80 char width80 char widthavoid -hist overflowformattingtweak healp for -split. cheers to @brentp for the nice additionsupport for extracting blocked BED records in fastaFromBedMerge pull request #28 from brentp/getfastaallow - to be specified for stdout fastachange -exons to -split. add tests that make sense.start of test for -exons argerrant debugstart of allowing to get concatenated sequence of exonsmissing includePrefer list over vector chromsweep's cache. Huge performance increases80char cleanup of merge.clear closest list if an overlap in closeststandardize tag reporting for bamtobedMerge pull request #27 from nathanweeks/master