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Created with Raphaël 2.2.018Dec161312119825Nov14543231Oct302922111018Sep1731Aug30242214824Jul2321201817326Jun198623May20151426Apr230Mar2013119628Feb242321191817161513121187530Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep2827232216151310865131Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765323Dec21Nov4Oct21Sep318Aug1665425Jul232221181715146543130Jun29876May543229Apr2826221514131229Mar232218restructure docsMerge branch 'master' of github.com:arq5x/bedtools[BUG] typo in database length calc.Merge pull request #45 from pryvkin/masterFixed segfault with -names option in tagBam[DOCS] update groupby usage[DOCS] updated version.[DOCS] updated sphinx docs for groupby[DOCS] updated sphinx docs for intersect.[ENC] Add -N (removeAny) option to subtract. Re-adding improvement from @brentpupdate .gitignoreremove commented codeallow -incl and -exclfirst cut at allowing -incl and -excl[ENH] Make it more clear than -abam supplants -a[ENH] improve desc. of what -wb does.[BUG] closest -s fails to report when only opp. strand B ivls exists.[BUG] non-redundant cluster ids in stranded (-s) mode.[OMM] add reldist source...[NEW] Added new "reldist" tool to measure the distribution of relative distances between two files[BUG] fix jaccard regression test.Merge branch 'master' of github.com:arq5x/bedtoolsMerge pull request #29 from charles-plessy/masterAllow overriding BT to test bedtools from other paths.Call bedtools via a shell variable called BT.update HISTORYSetting Release-Version v2.17.0jaccard testsadded new jaccard tool. see PMID: 22693437add "first" and "last" as new groupby options80 charrefactor VCF auto-detection80 char width80 char width80 char widthavoid -hist overflowformattingtweak healp for -split. cheers to @brentp for the nice additionsupport for extracting blocked BED records in fastaFromBedMerge pull request #28 from brentp/getfasta