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Created with Raphaël 2.2.017Feb161513121187530Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep2827232216151310865131Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765323Dec21Nov4Oct21Sep318Aug1665425Jul232221181715146543130Jun29876May543229Apr2826221514131229Mar2322181715141210319Feb126228Jan2723191110876543130Dec29201826Nov25191816141327Oct232120191521Sep17151428Aug22Jul25Jun1529May1912116528Apr272624232221159Merge pull request #16 from agordon/feature/auto_git_versionMakefile: Auto-generate version string from Git versionadded tests for clusterFixed bug preventing proper clustering. max(end) was not being updated.New tests for slop and flank. Fixed chrom end bug in flank.tweaks to help menusadded new tests for mergefixed bug in merge when using -n and -nms. Cleaned up logic and use VectorOpsremove additional strand from intersect -bed -abamcorrect bt random's helpnew tool: bedtools randomAllow input files to have consecutive tabs (i.e., empty fields)speedup merge -s a bitadded multiple new testschoose null for mapBedfix bed12tobed6 block num for - strand.Makefile tweak; Need newline in BlockedIntervals.hadd limits.h to VectorOps for INT_MAXtypoadded preliminary tests for mapfixed VectorOps mode and antimodefixed VectorOps mode and antimodefixed numbered listtypoadded general file formatting testsMention make test in READMEremove unnecessary test filesmore tests for intersectgreater control over splitting on D or N CIGAR ops.fix blocked_intervals merge conflictsMerge branch 'google_test'Fix make clean to erase bamtools objects. Thanks to John Marshall.Need HttpHeader_p.h as well.Update BamTools to avoid C++11 complicationsMakefile tweakAdded beginnings of regression testing framework.Merge pull request #15 from agordon/feature/makewindows_with_IDs1Merge pull request #14 from jakebiesinger/masterFix regression on intersectBed -wao, now reports all features from A,WindowMaker: fix bug with fixed number of windows.