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Created with Raphaël 2.2.07Feb530Jan2928272624231816121085231Dec3029211713128729Nov282517161587432126Oct25242111730Sep2827232216151310865131Aug24Jul19131165130Jun29282423221716151414Apr83129Mar221817103124Feb23167231Jan272521191413765323Dec21Nov4Oct21Sep318Aug1665425Jul232221181715146543130Jun29876May543229Apr2826221514131229Mar2322181715141210319Feb126228Jan2723191110876543130Dec29201826Nov25191816141327Oct232120191521Sep17151428Aug22Jul25Jun1529May1912116528Apr272624232221159fix bed12tobed6 block num for - strand.Makefile tweak; Need newline in BlockedIntervals.hadd limits.h to VectorOps for INT_MAXtypoadded preliminary tests for mapfixed VectorOps mode and antimodefixed VectorOps mode and antimodefixed numbered listtypoadded general file formatting testsMention make test in READMEremove unnecessary test filesmore tests for intersectgreater control over splitting on D or N CIGAR ops.fix blocked_intervals merge conflictsMerge branch 'google_test'Fix make clean to erase bamtools objects. Thanks to John Marshall.Need HttpHeader_p.h as well.Update BamTools to avoid C++11 complicationsMakefile tweakAdded beginnings of regression testing framework.Merge pull request #15 from agordon/feature/makewindows_with_IDs1Merge pull request #14 from jakebiesinger/masterFix regression on intersectBed -wao, now reports all features from A,WindowMaker: fix bug with fixed number of windows.WindowMaker: add output ID option.Merge pull request #13 from jakebiesinger/mastertweak to help in makewindows. thanks to @agordonmake windows from ivls in bed files.tool makefiles not recompile with changes to headerrefactored intersect; better -bed support for split BAM alignmentsfixed util Makefiles to recompile when header changesfix typoadd ranlib to bamtools' makefile. thx to jphn marshallbail out early if no ivls in binadded count_distinct to groupbyBugfix: fix segfault when -t first or -t last used with -iu or -idAdd ignore options for features up- and down-stream of Abail early if not BEDs in BIN; revert to map from unordered_mapAdded isBed12 attr. and overlap fraction support for blocked intervals.