obj · 19c4838cb78b1dac7e2c1412b6ef31fc13c1b678 · R3 / legacy / bedtools2 · GitLab

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Updated BEDPE reporting strategy for BAM files.

Aaron authored 15 years ago

	1. If intrachromosomal, choose the leftmost end.
	2. Else, choose the first mate.

19c4838c

19c4838c 15 years ago

Name	Last commit	Last update
..
BGZF.o
BamReader.o
BamWriter.o
bamToBed.o
bedFile.o
bedFilePE.o
closestBed.o
closestMain.o
complementBed.o
complementMain.o
coverageBed.o
coverageMain.o
fastaFromBed.o
fastaFromBedMain.o
genomeCoverageBed.o
genomeCoverageMain.o
intersectBed.o
intersectMain.o
lineFileUtilities.o
linksBed.o
linksMain.o
maskFastaFromBed.o
maskFastaFromBedMain.o
mergeBed.o
mergeMain.o
pairToBed.o
pairToBedMain.o
pairToPair.o
pairToPairMain.o
peIntersectBed.o
peIntersectMain.o
sequenceUtils.o
shuffleBed.o
shuffleBedMain.o
slopBed.o
slopBedMain.o
sortBed.o
sortMain.o
subtractBed.o
subtractMain.o
windowBed.o
windowMain.o