2021-07-27_IT101-DM

2021/2021-07-27_IT101-DM/slides/access_management.md

+# Access Management
+<div style="display:grid;grid-gap:100px;grid-template-columns: 40% 40%">
+<div >
+
+## UNI-LU Account
+  * Mails services including web mail: <a href="https://owa.uni.lu" style="color:blue; font-size:0.8em;">owa.uni.lu</a>
+  * Microsoft Office & Teams: <a href="https://service.uni.lu" style="color:blue; font-size:0.8em;">service.uni.lu</a>
+  * SAP services: <a href="https://fiori.uni.lu/fiori" style="color:blue; font-size:0.8em;">fiori.uni.lu/fiori</a>
+  * University's Intranet: <a href="https://intranet.uni.lux" style="color:blue; font-size:0.8em;">intranet.uni.lux</a>
+  * All remote work services : Webex, Slack...
+  
+
+</div>
+<div>
+<div class="fragment">
+
+## LUMS Account
+  * go to <a href="https://service.uni.lu" style="color:blue; font-size:0.8em;">service.uni.lu</a>: make a request and  go to <a href="https://lcsb-cdc-lums-02.uni.lu" style="color:blue; font-size:0.8em;">lums.uni.lu</a> to active your account upon receiving credentials 
+
+  <div style="position:absolute;left:20%;top:90%">
+  <img src="slides/img/access.png" height="400px">
+  </div>
+
+  <div style="position:absolute;left:60%;top:90%">
+  <img src="slides/img/lums.png" height="400px">
+  </div>  
+<div class="fragment">  
+
+    * Owncloud: <a href="http://owncloud.lcsb.uni.lu" style="color:blue; font-size:0.8em;">owncloud.lcsb.uni.lu</a>
+    * R3 Gitlab: <a href="https://git-r3lab.uni.lu" style="color:blue; font-size:0.8em;">git-r3lab.uni.lu</a>
+    * Private Bin: <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> 
+    * LCSB Wiki page, Webdav, LCSB Analytics page
+
+
+</div>
+</div>

2021/2021-07-27_IT101-DM/slides/code_versioning.md

+../../2021-04-20_IT101-DM/slides/code_versioning.md
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2021/2021-07-27_IT101-DM/slides/data-housekeeping.md

+../../2021-04-20_IT101-DM/slides/data-housekeeping.md
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2021/2021-07-27_IT101-DM/slides/data-introduction.md

+../../2021-04-20_IT101-DM/slides/data-introduction.md
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2021/2021-07-27_IT101-DM/slides/data_flow.md

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2021/2021-07-27_IT101-DM/slides/data_life_cycle.md

+
+# Some practical recommandations
+
+* Plan your data walking along the data life cycle
+
+<div class='fragment' style="position:relative;left:25%;top:60%">
+<img  align="middle" height="300px" src="slides/img/rdm-cycle.png">
+</div>
+<div class="fragment">
+
+* Use data management tools:
+  * DMPonline <a href="https://dmponline.elixir-luxembourg.org/" style="color:blue; font-size:0.8em;">https://dmponline.elixir-luxembourg.org/</a>
+   <img  src="slides/img/dmponline_logo.png" height="50px">
+  * DS Wizard <a href="https://learning.ds-wizard.org/" style="color:blue; font-size:0.8em;">https://learning.ds-wizard.org/</a> 
+  <img  src="slides/img/dsw_logo.png" height="100px">
+  
+<div>
+
+<div class="fragment">
+
+* Annotate your data and code using Ontologies and standardised metadata
+
+</div>
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2021/2021-07-27_IT101-DM/slides/fair-principles.md

+../../2021-04-20_IT101-DM/slides/fair-principles.md
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2021/2021-07-27_IT101-DM/slides/howtos.md

+../../2021-04-20_IT101-DM/slides/howtos.md
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2021/2021-07-27_IT101-DM/slides/img

+../../2021-04-20_IT101-DM/slides/img
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2021/2021-07-27_IT101-DM/slides/index.md

+# IT101 - Working with computers
+<br>IT101 - Working with computers<br>
+## July 27th, 2021
+
+<div style="top: 6em; left: 0%; position: absolute;">
+    <img src="theme/img/lcsb_bg.png">
+</div>
+
+<div style="top: 5em; left: 60%; position: absolute;">
+    <img src="slides/img/r3-training-logo.png" height="200px">
+    <br><br><br><br>
+    <h3></h3>
+    <br><br><br>
+    <h4>
+        Nene Barry<br>
+        Data Steward<br>
+        nene.barry@uni.lu<br>
+        <i>Luxembourg Centre for Systems Biomedicine</i>
+    </h4>
+</div>

2021/2021-07-27_IT101-DM/slides/ingestion.md

+../../2021-04-20_IT101-DM/slides/ingestion.md
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2021/2021-07-27_IT101-DM/slides/introduction.md

+../../2021-04-20_IT101-DM/slides/introduction.md
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2021/2021-07-27_IT101-DM/slides/list.json

+../../2021-04-20_IT101-DM/slides/list.json
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2021/2021-07-27_IT101-DM/slides/overview.md

+../../2021-04-20_IT101-DM/slides/overview.md
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2021/2021-07-27_IT101-DM/slides/problem_solving.md

+# Problem solving
+A guide for solving computing issues
+
+1. Express the problem 
+  * Write down what you want to achieve
+2. Search for help 
+  * Read **FAQs**, **help pages** and the **official documentation** well before turning to Google
+  * Use stack exchange, forums and related resources (carefully)
+3. Ask an expert 
+    * Submit the problem in writing
+    * Make the question interesting

2021/2021-07-27_IT101-DM/slides/r3_group.md

+# Responsible and Reproducible Research (R<sup>3</sup>)
+## What is R<sup>3</sup>?
+
+
+A multi-facetted change management
+process built on 3 pillars:
+
+- R3 pathfinder
+
+- R3 school
+
+- R3 accelerator
+
+Common link module: R3 clinic
+
+<div style="top: -1em; left: 50%; position: absolute;">
+    <img src="slides/img/3pillars-full.png">
+</div>
+  
+<br>
+<br>
+
+<aside class="notes">
+Pathfinder - policies, finding optimal data management changes<br>
+School - courses, howtos, trainnings<br>
+Accelerator - advanced teams and their boost/support, CI/CD setup<br>
+Clinic - hands-on, meetings in groups, code review + suggestions<br>
+</aside>
+
+## R<sup>3</sup> Training
+  * LCSB's Monthly Data Management and Data Protection training
+  * ELIXIR Luxembourg's trainings <br>
+   https://elixir-luxembourg.org/training
+    * First steps with R (2021-07-27)
+    * Statistical tests and statistical learning for omics data (2021-09-14)
+  * R<sup>3</sup> school Git basics - every 4 months 
+  <aside class="notes">
+    Direct newcommers to this monthly training  
+  </aside>
+
+
+
+# Responsible and Reproducible Research (R<sup>3</sup>)
+<section data-transition="none" data-background-image="slides/img/r3-training-logo.png" data-background-size="1000px" data-background-opacity="0.1">
+</section>
+<div style="display:block;text-align:center;position:relative;" >
+<div class="profile-container">
+
+  * Reinhard Schneider
+  * <img src="slides/img/R3_profile_pictures/reinhard_schneider.png">
+  * Head of Bioinformatics Core
+
+</div>
+<div class="profile-container">
+
+  * Pinar Alper
+  * <img src="slides/img/R3_profile_pictures/pinar_alper.png">
+  * Datasteward
+
+</div>
+<div class="profile-container">
+
+  * Yohan Yarosz</li>
+  * <img src="slides/img/R3_profile_pictures/yohan_yarosz.png">
+  * Development
+
+</div>
+<div class="profile-container">
+
+  * Laurent Heirendt</li>
+  * <img src="slides/img/R3_profile_pictures/laurent_heirendt.png">
+  * Git, CI
+
+</div>
+<div class="profile-container">
+
+  * Sarah Peter</li>
+  * <img src="slides/img/R3_profile_pictures/sarah_peter.png">
+  * Infrastructure
+
+</div>
+<div class="profile-container">
+
+  * Valentine Groues</li>
+  * <img src="slides/img/R3_profile_pictures/valentine_groues.png">
+  * Development
+  
+</div>
+<div class="profile-container">
+
+  * Vilem Ded</li>
+  * <img src="slides/img/R3_profile_pictures/vilem_ded.png">
+  * Datasteward
+  
+</div>
+<div class="profile-container">
+
+  * Noua Toukourou</li>
+  * <img src="slides/img/R3_profile_pictures/noua_toukourou.png">
+  * Infrastructure
+  
+</div>
+<div class="profile-container">
+
+  * Alexey Kolodkin</li>
+  * <img src="slides/img/R3_profile_pictures/alexey_kolodkin.png">
+  * Datasteward
+  
+</div>
+<div class="profile-container">
+
+  * Maharshi Vyas</li>
+  * <img src="slides/img/R3_profile_pictures/maharshi_vyas.png">
+  * Infrastructure
+  
+</div>
+
+<div class="profile-container">
+
+  * Nene Barry</li>
+  * <img src="slides/img/R3_profile_pictures/nene_barry.png">
+  * Datasteward
+  
+</div>
+
+<div class="profile-container">
+
+  * Karim Chaouch</li>
+  * <img src="slides/img/R3_profile_pictures/karim_chaouch.png">
+  * Development
+  
+</div>
+<div class="profile-container">
+
+  * Christophe Trefois
+  * <img src="slides/img/R3_profile_pictures/christophe_trefois.png">
+  * R<sup>3</sup> team lead
+
+</div>
+</div>

2021/2021-07-27_IT101-DM/slides/reproducibility.md

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2021/2021-07-27_IT101-DM/slides/storage_setup.md

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2021/2021-07-27_IT101-DM/slides/thanks.md

+../../2021-04-20_IT101-DM/slides/thanks.md
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2021/2021-07-27_IT101-DM/slides/visualization.md

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