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README.md

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 This Snakemake template is inspired from https://github.com/maxsonBraunLab/cutTag-pipeline
 
 
-It used a specific peak caller for Cut&Tag: [gopeaks](https://github.com/maxsonBraunLab/gopeaks) and published in [Genome Biol](https://doi.org/10.1186/s13059-022-02707-w)
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+It used a specific peak caller for Cut&Tag: [gopeaks](https://github.com/maxsonBraunLab/gopeaks) and published in [Genome Biol](https://doi.org/10.1186/s13059-022-02707-w)
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+## TODO
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+- Markdup?
+- Mapping quality filtering? Not done in `gopeaks` AFAIK
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