remove .sbml.sif files

Executable Modules/SBML_Qual_build/sif/Apoptosis_stable.sbml.sif

-FADD POSITIVE FAS/FASL_complex
-BCL2/MCL1/BCL2L1_complex POSITIVE BAD/BBC3/BCL2L11_complex
-BAX POSITIVE BAD/BBC3/BCL2L11_complex
-Orf7a POSITIVE BCL2/MCL1/BCL2L1_complex
-E POSITIVE BCL2/MCL1/BCL2L1_complex
-BAD NEGATIVE BCL2/MCL1/BCL2L1_complex
-BAX NEGATIVE BCL2/MCL1/BCL2L1_complex
-CYCS POSITIVE Apoptosome_complex
-AKT1 NEGATIVE Apoptosome_complex
-CASP9_Cytoplasm POSITIVE Apoptosome_complex
-MAPK14 POSITIVE CYCS
-CASP9_Cytoplasm NEGATIVE AKT1
-M NEGATIVE AKT1
-BAD NEGATIVE AKT1
-TRADD/FADD_complex POSITIVE TNF/TNFRSF1A_complex
-FADD POSITIVE TRADD/FADD_complex
-TRADD POSITIVE TRADD/FADD_complex
-CASP8 POSITIVE TRADD/FADD_complex
-CASP8 POSITIVE FADD
-CASP3 POSITIVE CASP8
-BID POSITIVE CASP8
-CASP7 POSITIVE CASP8
-CASP9_Cytoplasm POSITIVE CASP3
-Apoptosis_phenotype POSITIVE CASP3
-CASP7 POSITIVE CASP9_Cytoplasm
-BAX POSITIVE BID
-Orf3a POSITIVE MAPK14
-Apoptosis_phenotype POSITIVE CASP7
-Orf3b POSITIVE Apoptosis_phenotype
-Orf8a POSITIVE Apoptosis_phenotype
-N POSITIVE Apoptosis_phenotype
-S POSITIVE Apoptosis_phenotype
-Orf9b POSITIVE Apoptosis_phenotype
-Orf6 POSITIVE Apoptosis_phenotype

Executable Modules/SBML_Qual_build/sif/Coagulation-pathway_stable.sbml.sif

-KLKB1 POSITIVE KNG1:KLKB1_complex
-KNG1 POSITIVE KNG1:KLKB1_complex
-F12a POSITIVE KNG1:KLKB1_complex
-Kininogen POSITIVE KNG1:KLKB1_complex
-Bradykinin POSITIVE KNG1:KLKB1_complex
-F12a POSITIVE KLKB1
-Small peptide_Blood POSITIVE KLKB1
-Plasmin_Blood POSITIVE KLKB1
-Kallikrein POSITIVE KLKB1
-F12 POSITIVE F12a
-F11 POSITIVE F12a
-F11a POSITIVE F12a
-Kallikrein POSITIVE F12a
-F10 POSITIVE F5a:F10a_complex
-F9a POSITIVE F5a:F10a_complex
-Antithrombin NEGATIVE F5a:F10a_complex
-F5 POSITIVE F5a:F10a_complex
-Thrombin:Thrombomodulin_complex NEGATIVE F5a:F10a_complex
-PROC NEGATIVE F5a:F10a_complex
-Thrombin_Blood POSITIVE F5a:F10a_complex
-Small peptide_Blood POSITIVE F10
-F8:F9_complex POSITIVE F9a
-F9 POSITIVE F9a
-F11a POSITIVE F9a
-Small peptide_Blood POSITIVE F9a
-TAT complex_complex POSITIVE Antithrombin
-Small peptide_Blood NEGATIVE Antithrombin
-Thrombin_Blood NEGATIVE Antithrombin
-SARS-CoV-2 infection_phenotype_Blood POSITIVE Antithrombin
-Thrombin_Blood POSITIVE Thrombin:Thrombomodulin_complex
-Thrombomodulin POSITIVE Thrombin:Thrombomodulin_complex
-Fibrin monomer NEGATIVE Thrombin:Thrombomodulin_complex
-F8a POSITIVE PROC
-SARS-CoV-2 infection_phenotype_Blood POSITIVE PROC
-F8a POSITIVE F8:F9_complex
-F8 POSITIVE F8a
-Small peptide_Blood POSITIVE F8a
-SERPINE1 POSITIVE PLAT:SERPINE1_complex
-PLAT_Blood POSITIVE PLAT:SERPINE1_complex
-SARS-CoV-2 infection_phenotype_Blood POSITIVE PLAT:SERPINE1_complex
-PLAT_Blood NEGATIVE SERPINE1
-angiotensin II_simple_molecule POSITIVE SERPINE1
-PLAU NEGATIVE SERPINE1
-PLAT_Blood POSITIVE PLAT_Blood
-Fibrinogen_complex POSITIVE SARS-CoV-2 infection_phenotype_Blood
-D-dimer POSITIVE SARS-CoV-2 infection_phenotype_Blood
-Thrombomodulin POSITIVE SARS-CoV-2 infection_phenotype_Blood
-Fibrin monomer POSITIVE SARS-CoV-2 infection_phenotype_Blood
-VWF POSITIVE SARS-CoV-2 infection_phenotype_Blood
-Fibrinogen:GP6_complex POSITIVE Fibrinogen_complex
-Fibrin monomer POSITIVE Fibrinogen_complex
-Thrombin_Blood POSITIVE TAT complex_complex
-SARS-CoV-2 infection_phenotype_Blood POSITIVE TAT complex_complex
-F11 POSITIVE Thrombin_Blood
-F11a POSITIVE Thrombin_Blood
-F8 POSITIVE Thrombin_Blood
-Thrombin_Blood POSITIVE Thrombin_Blood
-Heparin_simple_molecule POSITIVE Thrombin_Blood
-Small peptide_Blood POSITIVE Thrombin_Blood
-TAFI POSITIVE Thrombin_Blood
-SERPINF2:Plasmin_complex POSITIVE SARS-CoV-2 infection_phenotype_Blood
-C3b POSITIVE C3b:Bb:C3b_complex
-C3b:Bb_complex POSITIVE C3b:Bb:C3b_complex
-C5b-9_complex_Endothelium, vascular POSITIVE C3b:Bb:C3b_complex
-C5a POSITIVE C3b:Bb:C3b_complex
-C3 POSITIVE C3b
-C3b:Bb_complex POSITIVE C3b
-C2a:C4b_complex POSITIVE C3b
-C3a POSITIVE C3b:Bb_complex
-SARS-CoV-2 infection_phenotype_Blood POSITIVE C5b-9_complex_Endothelium, vascular
-C5 POSITIVE C5b-9_complex_Endothelium, vascular
-C2a:C4b_complex POSITIVE C5b-9_complex_Endothelium, vascular
-C5b-9_complex_Endothelium, vascular POSITIVE C5b-9_complex_Endothelium, vascular
-Plasminogen POSITIVE C5b-9_complex_Endothelium, vascular
-Thrombosis_phenotype POSITIVE C5b-9_complex_Endothelium, vascular
-F8 POSITIVE SARS-CoV-2 infection_phenotype_Blood
-TNF POSITIVE SARS-CoV-2 infection_phenotype_Blood
-IL6 POSITIVE SARS-CoV-2 infection_phenotype_Blood
-IL1B POSITIVE SARS-CoV-2 infection_phenotype_Blood
-C5a POSITIVE SARS-CoV-2 infection_phenotype_Blood
-IL8 POSITIVE SARS-CoV-2 infection_phenotype_Blood
-IL2RA POSITIVE SARS-CoV-2 infection_phenotype_Blood
-CRP POSITIVE SARS-CoV-2 infection_phenotype_Blood
-C5a POSITIVE C5
-C4b POSITIVE C2a:C4b_complex
-C2a POSITIVE C2a:C4b_complex
-C5a POSITIVE C2a:C4b_complex
-C3a POSITIVE C2a:C4b_complex
-C4 POSITIVE C4b
-MASP2 POSITIVE C4b
-C4d POSITIVE C4b
-C2 POSITIVE C2a
-MASP1 POSITIVE C2a
-ACE2_Blood POSITIVE ACE2:Spike_complex
-SARS-CoV-2 viral entry_phenotype POSITIVE ACE2:Spike_complex
-ACE2_Endothelium, vascular POSITIVE ACE2_Blood
-Plasmin_Blood POSITIVE SERPINF2:Plasmin_complex
-SERPINF2 POSITIVE SERPINF2:Plasmin_complex
-D-dimer POSITIVE Plasmin_Blood
-Plasminogen POSITIVE Plasmin_Blood
-PLAT_Blood POSITIVE Plasmin_Blood
-PLAU POSITIVE Plasmin_Blood
-F11a POSITIVE Plasmin_Blood
-GP6 POSITIVE Fibrinogen:GP6_complex
-platelet activation_phenotype POSITIVE Fibrinogen:GP6_complex
-GP6:alpha2:beta1_complex POSITIVE GP6
-GP6:alpha2:beta1_complex POSITIVE GP6:alpha2beta1:VWF_complex
-VWF POSITIVE GP6:alpha2beta1:VWF_complex
-platelet activation_phenotype POSITIVE GP6:alpha2beta1:VWF_complex
-ITGA2:ITGAB1_complex POSITIVE GP6:alpha2:beta1_complex
-Thrombosis_phenotype POSITIVE VWF
-Small peptide_Blood POSITIVE F12
-Prothrombin POSITIVE Thrombin_Blood
-angiotensin I_simple_molecule POSITIVE angiotensin II_simple_molecule
-ACE POSITIVE angiotensin II_simple_molecule
-SARS-CoV-2 infection_phenotype_Blood POSITIVE angiotensin II_simple_molecule
-Thrombosis_phenotype POSITIVE angiotensin II_simple_molecule
-angiotensin I-7_simple_molecule POSITIVE angiotensin II_simple_molecule
-AGTR1 POSITIVE angiotensin II_simple_molecule
-Bradykinin(1-5) POSITIVE ACE
-C4d POSITIVE SARS-CoV-2 infection_phenotype_Blood
-ACE2_Endothelium, vascular NEGATIVE SARS-CoV-2 infection_phenotype_Blood
-MASP2 POSITIVE SARS-CoV-2 infection_phenotype_Blood
-Fibrin polymer POSITIVE D-dimer
-TAFI POSITIVE D-dimer
-Fibrin monomer POSITIVE Fibrin polymer
-F13a POSITIVE Fibrin polymer
-Bradykinin POSITIVE PLAT_Blood
-Bradykinin(1-5) POSITIVE Bradykinin
-cytokine storm_phenotype POSITIVE TNF
-Thrombosis_phenotype POSITIVE TNF
-IL6 POSITIVE cytokine storm_phenotype
-IL1B POSITIVE cytokine storm_phenotype
-IL8 POSITIVE cytokine storm_phenotype
-IL2RA POSITIVE cytokine storm_phenotype
-Thrombosis_phenotype POSITIVE IL6
-Thrombosis_phenotype POSITIVE IL1B
-Plasmin_Blood POSITIVE C5a
-IL2RA POSITIVE Thrombosis_phenotype
-C4d POSITIVE Thrombosis_phenotype
-IL8 POSITIVE Thrombosis_phenotype
-CRP POSITIVE Thrombosis_phenotype
-CFI POSITIVE C4d
-C3 POSITIVE C3a
-MBL2 POSITIVE MASP1
-C2b POSITIVE MASP1
-C4 POSITIVE C4a
-MASP2 POSITIVE C4a
-C2b POSITIVE C2
-angiotensin I-7_simple_molecule POSITIVE ACE2_Endothelium, vascular
-Thrombin_Blood POSITIVE Fibrin monomer
-MAS1 POSITIVE angiotensin I-7_simple_molecule
-thrombus formation_phenotype POSITIVE platelet activation_phenotype
-MAS1 POSITIVE thrombus formation_phenotype
-AGTR1 POSITIVE thrombus formation_phenotype

Executable Modules/SBML_Qual_build/sif/ER_Stress_stable.sbml.sif

-ERN1:Unfolded protein_complex POSITIVE TRAF2:ERN1_complex
-BAK1:ERN1_complex POSITIVE TRAF2:ERN1_complex
-BAX:ERN1_complex POSITIVE TRAF2:ERN1_complex
-BCL2 NEGATIVE TRAF2:ERN1_complex
-BCL2L1 NEGATIVE TRAF2:ERN1_complex
-Persistant ER Stress_phenotype NEGATIVE TRAF2:ERN1_complex
-BAX POSITIVE TRAF2:ERN1_complex
-BAK1 POSITIVE TRAF2:ERN1_complex
-UPR_phenotype POSITIVE TRAF2:ERN1_complex
-TRAF2_Cytoplasm POSITIVE TRAF2:ERN1_complex
-MAP3K5_phosphorylated POSITIVE TRAF2:ERN1_complex
-XBP1_rna POSITIVE TRAF2:ERN1_complex
-Unfolded protein_Endoplasmic Reticulum POSITIVE ERN1:Unfolded protein_complex
-CASP8:FADD:MAP1LC3A:SQSTM1:ATG5_complex POSITIVE Persistant ER Stress_phenotype
-EIF2AK3:EIF2AK3_complex POSITIVE Persistant ER Stress_phenotype
-ERN1:BCL2L11_complex NEGATIVE Persistant ER Stress_phenotype
-ERN1:BBC3_complex NEGATIVE Persistant ER Stress_phenotype
-DDIT3_rna POSITIVE Persistant ER Stress_phenotype
-ER Stress_phenotype POSITIVE Persistant ER Stress_phenotype
-TRIM13 POSITIVE CASP8:FADD:MAP1LC3A:SQSTM1:ATG5_complex
-Apoptosis_phenotype POSITIVE CASP8:FADD:MAP1LC3A:SQSTM1:ATG5_complex
-EIF2AK3 POSITIVE EIF2AK3:EIF2AK3_complex
-Unfolded protein_Endoplasmic Reticulum POSITIVE EIF2AK3:EIF2AK3_complex
-retrograde transport from ER to cytosol_phenotype POSITIVE EIF2AK3:EIF2AK3_complex
-UPR_phenotype POSITIVE EIF2AK3:EIF2AK3_complex
-EIF2S1_phosphorylated POSITIVE EIF2AK3:EIF2AK3_complex
-accumulation of misfolded protein in ER_phenotype POSITIVE Unfolded protein_Endoplasmic Reticulum
-Ternary Complex_complex POSITIVE EIF2:GDP:Met-tRNA_complex
-EIF2S2 POSITIVE EIF2:GDP:Met-tRNA_complex
-EIF2S3:GDP_complex POSITIVE EIF2:GDP:Met-tRNA_complex
-EIF2B_complex POSITIVE Ternary Complex_complex
-Translation initiation_phenotype POSITIVE Ternary Complex_complex
-EIF2-P:GDP_complex POSITIVE EIF2S2
-EIF2S1_phosphorylated POSITIVE EIF2-P:GDP_complex
-ATF4_rna POSITIVE EIF2-P:GDP_complex
-EIF2S1 POSITIVE EIF2S1_phosphorylated
-GCN2:ATP_complex POSITIVE EIF2S1_phosphorylated
-EIF2AK2 POSITIVE EIF2S1_phosphorylated
-DNAJC3_Cytoplasm NEGATIVE EIF2S1_phosphorylated
-ERN1 POSITIVE ERN1:BCL2L11_complex
-BCL2L11_Endoplasmic Reticulum POSITIVE ERN1:BCL2L11_complex
-XBP1_rna POSITIVE ERN1:BCL2L11_complex
-ERN1:BBC3_complex POSITIVE ERN1
-BBC3 POSITIVE ERN1:BBC3_complex
-XBP1_rna POSITIVE ERN1:BBC3_complex
-CAPN1 POSITIVE CAPN1:Ca2+_complex
-Ca2+_ion_Cytoplasm POSITIVE CAPN1:Ca2+_complex
-high Ca2+ cytosolic concentration_phenotype POSITIVE CAPN1:Ca2+_complex
-cleaved~CASP4 POSITIVE CAPN1:Ca2+_complex
-TMBIM6 POSITIVE Ca2+_ion_Cytoplasm
-RYR1 POSITIVE Ca2+_ion_Cytoplasm
-ITPR POSITIVE Ca2+_ion_Cytoplasm
-high Ca2+ cytosolic concentration_phenotype POSITIVE Ca2+_ion_Cytoplasm
-release of ER Ca2+_phenotype POSITIVE high Ca2+ cytosolic concentration_phenotype
-ATF6:HSPA5_complex POSITIVE ATF6_Endoplasmic Reticulum
-Unfolded protein_Endoplasmic Reticulum POSITIVE ATF6_Endoplasmic Reticulum
-retrograde transport from ER to cytosol_phenotype POSITIVE ATF6_Endoplasmic Reticulum
-ATF6_Golgi POSITIVE ATF6_Endoplasmic Reticulum
-HSPA5 POSITIVE ATF6:HSPA5_complex
-HSPA5 POSITIVE Unfolded protein_Endoplasmic Reticulum
-protein ubiquitination and destruction_phenotype POSITIVE retrograde transport from ER to cytosol_phenotype
-ATF6_Golgi NEGATIVE retrograde transport from ER to cytosol_phenotype
-XBP1_rna POSITIVE XBP1_Cytoplasm
-DDIT3_rna POSITIVE XBP1_Cytoplasm
-ATF6_Nucleus POSITIVE XBP1_rna
-XBP1_Cytoplasm POSITIVE UPR_phenotype
-accumulation of misfolded protein in ER_phenotype POSITIVE UPR_phenotype
-ATF6_Golgi POSITIVE UPR_phenotype
-ERAD_phenotype POSITIVE XBP1_Cytoplasm
-ER Stress_phenotype POSITIVE accumulation of misfolded protein in ER_phenotype
-ERAD_phenotype POSITIVE accumulation of misfolded protein in ER_phenotype
-ATF6_Golgi POSITIVE ATF6_Golgi
-MBTPS2 POSITIVE ATF6_Golgi
-ATF6_Nucleus POSITIVE ATF6_Golgi
-MAP3K4_phosphorylated POSITIVE MAPK8_phosphorylated
-MAP3K5_phosphorylated POSITIVE MAPK8_phosphorylated
-BAX_phosphorylated POSITIVE MAPK8_phosphorylated
-AP-1_phosphorylated_phosphorylated POSITIVE MAPK8_phosphorylated
-BCL2L11_phosphorylated POSITIVE MAPK8_phosphorylated
-BID_phosphorylated POSITIVE MAPK8_phosphorylated
-CDK5 POSITIVE MAP3K4_phosphorylated
-MAPK14_phosphorylated_Cytoplasm POSITIVE MAP3K5_phosphorylated
-TRAF2_Cytoplasm POSITIVE MAP3K5_phosphorylated
-Apoptosis_phenotype POSITIVE MAPK14_phosphorylated_Cytoplasm
-BAX_phosphorylated POSITIVE MAPK14_phosphorylated_Cytoplasm
-DDIT3_phosphorylated POSITIVE Apoptosis_phenotype
-BAX_phosphorylated POSITIVE Apoptosis_phenotype
-BCL2L11_phosphorylated POSITIVE Apoptosis_phenotype
-BID_phosphorylated POSITIVE Apoptosis_phenotype
-TRIB3 POSITIVE Apoptosis_phenotype
-cleaved~CASP3 POSITIVE Apoptosis_phenotype
-cleaved~CASP9 POSITIVE Apoptosis_phenotype
-Cell survival_phenotype POSITIVE Apoptosis_phenotype
-DDIT3 POSITIVE DDIT3_phosphorylated
-MAPK14_phosphorylated_Cytoplasm POSITIVE DDIT3_phosphorylated
-BCL2_rna NEGATIVE DDIT3_phosphorylated
-release of ER Ca2+_phenotype POSITIVE BAX_phosphorylated
-BCL2L11_Cytoplasm POSITIVE BCL2L11_phosphorylated
-TRIB3_rna POSITIVE TRIB3
-CASP3 POSITIVE cleaved~CASP3
-cleaved~CASP4 POSITIVE cleaved~CASP3
-CASP9 POSITIVE cleaved~CASP9
-cleaved~CASP4 POSITIVE cleaved~CASP9
-DDIT3_rna POSITIVE DDIT3
-PPP1R15A_rna POSITIVE DDIT3
-ERO1A_rna POSITIVE DDIT3
-AP-1_phosphorylated_phosphorylated POSITIVE DDIT3
-TRIB3_rna POSITIVE DDIT3
-ER Stress_phenotype POSITIVE ATF6_Golgi
-ATF6_Golgi POSITIVE ATF6_Golgi
-CDK5 POSITIVE ER Stress_phenotype
-MBTPS1 POSITIVE ATF6_Golgi
-DDIT3_rna POSITIVE ATF6_Nucleus
-ERO1A_rna POSITIVE ATF6_Nucleus
-DNAJC3_rna POSITIVE ATF6_Nucleus
-HYOU1_rna POSITIVE ATF6_Nucleus
-ATF4 POSITIVE DDIT3_rna
-ATF4_rna POSITIVE ATF4
-PPP1R15A_rna POSITIVE ATF4
-PPP1R15A POSITIVE EIF2S1
-EIF2AK1 POSITIVE EIF2S1
-presence of dsRNA_phenotype POSITIVE EIF2AK2
-DNAJC3_Cytoplasm NEGATIVE EIF2AK2
-DNAJC3_rna POSITIVE DNAJC3_Cytoplasm
-PPP1R15A_rna POSITIVE PPP1R15A
-ERO1A_rna POSITIVE ERO1A_Cytoplasm
-Ca2+_ion_Mitochondria POSITIVE release of ER Ca2+_phenotype
-ITPR POSITIVE Ca2+_ion_Mitochondria
-MAM_phenotype POSITIVE Ca2+_ion_Mitochondria
-s619_complex POSITIVE Ca2+_ion_Mitochondria
-TMBIM6 POSITIVE ITPR
-ERO1A_Endoplasmic Reticulum POSITIVE ITPR
-ERO1A_Endoplasmic Reticulum POSITIVE hyperoxidation_phenotype
-PPP2CA POSITIVE BCL2L11_Cytoplasm
-CASP4 POSITIVE cleaved~CASP4
-HYOU1 POSITIVE HYOU1_rna

Executable Modules/SBML_Qual_build/sif/ETC_stable.sbml.sif

-OXPHOS factors_complex POSITIVE Complex 1_complex
-complex 2_complex_mitochondrial matrix POSITIVE Complex 1_complex
-complex 3_complex POSITIVE Complex 1_complex
-NAD+_simple_molecule POSITIVE Complex 1_complex
-H+_ion_Intermembrane space POSITIVE Complex 1_complex
-paraquat_simple_molecule POSITIVE Complex 1_complex
-complex 2_complex_mitochondrial matrix POSITIVE OXPHOS factors_complex
-complex 3_complex POSITIVE OXPHOS factors_complex
-complex 4_complex POSITIVE OXPHOS factors_complex
-mt mRNA_rna POSITIVE mtDNA encoded OXPHOS units_complex_mitochondrial matrix
-Mt translation_complex POSITIVE mtDNA encoded OXPHOS units_complex_mitochondrial matrix
-Mt ribosomal proteins_complex POSITIVE mtDNA encoded OXPHOS units_complex_mitochondrial matrix
-Nsp8-affected Mt ribosomal proteins_complex POSITIVE mtDNA encoded OXPHOS units_complex_mitochondrial matrix
-mt DNA_gene POSITIVE mt mRNA_rna
-TFAM POSITIVE mt mRNA_rna
-MT transcription_complex POSITIVE mt mRNA_rna
-damaged mt DNA_gene NEGATIVE mt mRNA_rna
-Nsp8 NEGATIVE Nsp8-affected Mt ribosomal proteins_complex
-SIRT3_mitochondrial matrix POSITIVE complex 2_complex_mitochondrial matrix
-complex 2_complex_mitochondrial matrix POSITIVE complex 2_complex_mitochondrial matrix
-TCA_phenotype POSITIVE complex 2_complex_mitochondrial matrix
-Q_simple_molecule_mitochondrial matrix POSITIVE complex 3_complex
-complex 4_complex POSITIVE complex 3_complex
-O^_2-_endsuper__simple_molecule POSITIVE complex 3_complex
-H+_ion_Intermembrane space POSITIVE complex 3_complex
-H+_ion_Intermembrane space POSITIVE ATP Synthase_complex
-H+_ion_Intermembrane space POSITIVE ATP Synthase_complex
-H+_ion_Intermembrane space POSITIVE ATP Synthase_complex
-Nsp6 NEGATIVE ATP Synthase_complex
-ATP_simple_molecule POSITIVE ATP Synthase_complex
-H+_ion_mitochondrial matrix POSITIVE ATP Synthase_complex
-Cyt C_mitochondrial matrix POSITIVE complex 4_complex
-paraquat_simple_molecule POSITIVE paraquat dication_complex
-superoxide_simple_molecule_mitochondrial matrix POSITIVE paraquat_simple_molecule
-mt DNA_gene POSITIVE MT tRNAs_complex
-Mt-tRNA synthetase_complex POSITIVE MT tRNAs_complex
-TRMT1 POSITIVE MT tRNAs_complex
-mt DNA damage_phenotype NEGATIVE mt DNA_gene
-mt DNA replication_phenotype POSITIVE mt DNA_gene
-damaged mt DNA_gene POSITIVE mt DNA_gene
-TFAM POSITIVE mt DNA_gene
-Mt-DNA repair_complex POSITIVE mt DNA_gene
-Mt-dNTP pool_complex POSITIVE mt DNA_gene
-NSP4 NEGATIVE TIM22 complex_complex
-precursor protein N-terminus binding POSITIVE TIM22 complex_complex
-TIM9-TIM10 complex_complex NEGATIVE NSP4
-precursor protein N-terminus binding POSITIVE TIM9-TIM10 complex_complex
-NADH_simple_molecule POSITIVE NAD+_simple_molecule
-O_2__simple_molecule_mitochondrial matrix POSITIVE O^_2-_endsuper__simple_molecule
-ADP_simple_molecule POSITIVE ATP_simple_molecule
-Pi_simple_molecule POSITIVE ATP_simple_molecule
-H+_ion_mitochondrial matrix POSITIVE ATP_simple_molecule
-H_2_O_2__simple_molecule POSITIVE superoxide_simple_molecule_mitochondrial matrix
-O_2__simple_molecule_mitochondrial matrix POSITIVE superoxide_simple_molecule_mitochondrial matrix
-ROS_simple_molecule POSITIVE superoxide_simple_molecule_mitochondrial matrix
-SOD1 POSITIVE H_2_O_2__simple_molecule
-superoxide_simple_molecule_mitochondrial matrix POSITIVE H_2_O_2__simple_molecule
-SOD2 POSITIVE H_2_O_2__simple_molecule
-H_2_O_simple_molecule_mitochondrial matrix POSITIVE H_2_O_2__simple_molecule
-ROS_simple_molecule POSITIVE H_2_O_2__simple_molecule
-HO_simple_molecule POSITIVE H_2_O_2__simple_molecule
-O_2__simple_molecule_mitochondrial matrix POSITIVE superoxide_simple_molecule_mitochondrial matrix
-ROS_simple_molecule POSITIVE superoxide_simple_molecule_mitochondrial matrix
-SIRT3_mitochondrial matrix POSITIVE SOD2
-PRDX_complex POSITIVE H_2_O_simple_molecule_mitochondrial matrix
-GPX4 POSITIVE H_2_O_simple_molecule_mitochondrial matrix
-GPX1 POSITIVE H_2_O_simple_molecule_mitochondrial matrix
-CAT POSITIVE H_2_O_simple_molecule_mitochondrial matrix
-hydroxide_simple_molecule POSITIVE ROS_simple_molecule
-HO_simple_molecule POSITIVE hydroxide_simple_molecule
-glutathione disulfide_simple_molecule POSITIVE glutathione_simple_molecule
-GSR POSITIVE glutathione_simple_molecule
-TXNRD2 POSITIVE TXN2
-mt DNA replication_phenotype POSITIVE TFAM
-mt DNA damage_phenotype POSITIVE damaged mt DNA_gene
-Mt replication_complex POSITIVE mt DNA replication_phenotype
-Mt-dNTP pool_complex POSITIVE mt DNA replication_phenotype
-Orf9c NEGATIVE NDUFB9
-NDUFA1 NEGATIVE Orf9c
-ECSIT NEGATIVE Orf9c
-ACAD9 NEGATIVE Orf9c
-Nsp7 NEGATIVE NDUFAF7
-TOM complex_complex POSITIVE precursor protein N-terminus binding
-TIM23 complex_complex POSITIVE precursor protein N-terminus binding

Executable Modules/SBML_Qual_build/sif/E_protein_stable.sbml.sif

-histone_complex_Nucleus POSITIVE histone_complex_Nucleus
-BRD4 POSITIVE histone_complex_Nucleus
-BRD2 POSITIVE histone_complex_Nucleus
-Chromatin organization_phenotype POSITIVE histone_complex_Nucleus
-H4C14 POSITIVE histone_complex_Nucleus
-P-TEFb_complex POSITIVE BRD4
-E_Nucleus NEGATIVE BRD4
-TBP POSITIVE BRD2
-E_Nucleus NEGATIVE BRD2
-JQ1 NEGATIVE BRD2
-PALS1_Cytoplasm POSITIVE CRB3:PALS1:PATJ complex_complex
-PALS1_Cytoplasm POSITIVE PALS1_Cytoplasm
-E_Cytoplasm NEGATIVE ASIC1 trimer:H+:STOML3_complex
-ASIC1 trimer POSITIVE ASIC1 trimer:H+:STOML3_complex
-ATP1A:ATP1B:FXYDs_complex NEGATIVE E_Cytoplasm
-K+_ion POSITIVE ATP1A:ATP1B:FXYDs_complex
-E_Cytoplasm POSITIVE E-PALS1_complex
-PALS1_Cytoplasm POSITIVE E-PALS1_complex
-CDK9 POSITIVE P-TEFb_complex
-CCNT1 POSITIVE P-TEFb_complex
-RNA Polymerase II-dependent Transcription _phenotype POSITIVE P-TEFb_complex

Executable Modules/SBML_Qual_build/sif/HMOX1_Pathway_stable.sbml.sif

-NRF2_phosphorylated_Nucleus POSITIVE Nrf2/Maf_complex
-MAF POSITIVE Nrf2/Maf_complex
-HMOX1_rna POSITIVE Nrf2/Maf_complex
-NRF2_phosphorylated_Cytosol POSITIVE NRF2_phosphorylated_Nucleus
-SLC40A1_rna POSITIVE NRF2_phosphorylated_Nucleus
-FTH1_rna POSITIVE NRF2_phosphorylated_Nucleus
-FTL_rna POSITIVE NRF2_phosphorylated_Nucleus
-FECH_rna POSITIVE NRF2_phosphorylated_Nucleus
-BLVRA_rna POSITIVE NRF2_phosphorylated_Nucleus
-BLVRB_rna POSITIVE NRF2_phosphorylated_Nucleus
-BACH1/Maf_complex POSITIVE MAF
-BACH1 POSITIVE BACH1/Maf_complex
-HMOX1_rna NEGATIVE BACH1/Maf_complex
-miRNA-155_rna NEGATIVE BACH1
-CAND1 NEGATIVE Ubiquitin Ligase Complex_complex_Cytosol
-CUL3:RBX1_complex POSITIVE Ubiquitin Ligase Complex_complex_Cytosol
-NRF2_empty POSITIVE Ubiquitin Ligase Complex_complex_Cytosol
-KEAP1 POSITIVE Ubiquitin Ligase Complex_complex_Cytosol
-Dimethly fumarate_drug NEGATIVE Ubiquitin Ligase Complex_complex_Cytosol
-Ubiquitin Ligase Complex_complex_Cytosol POSITIVE Ubiquitin Ligase Complex_complex_Cytosol
-NRF2_phosphorylated_Cytosol POSITIVE NRF2_empty
-Ubiquitin Ligase Complex_complex_Cytosol POSITIVE Ubiquitin Ligase Complex_complex_Cytosol
-FTH1_rna POSITIVE Ferritin_complex
-FTL_rna POSITIVE Ferritin_complex
-Fe(3+)O(OH)_simple_molecule POSITIVE Ferritin_complex
-SLC40A1_rna POSITIVE SLC40A1:CP:Cu2+_complex
-BLVRA_rna POSITIVE BLVRA:Zn2+_complex
-Bilirubin_simple_molecule POSITIVE BLVRA:Zn2+_complex
-TFRC POSITIVE TFRC:holoTF_complex_Cytosol
-TFRC:holoTF_complex_Endosome Lumen POSITIVE TFRC:holoTF_complex_Cytosol
-TFRC:TF_complex_Cytosol POSITIVE TFRC
-TFRC:TF_complex_Endosome Lumen POSITIVE TFRC:holoTF_complex_Endosome Lumen
-Fe3+_ion POSITIVE TFRC:holoTF_complex_Endosome Lumen
-TFRC:TF_complex_Cytosol POSITIVE TFRC:TF_complex_Endosome Lumen
-Heme_simple_molecule_Mitochondrial Matrix POSITIVE Heme_simple_molecule_Cytosol
-FLVCR1-2 POSITIVE Heme_simple_molecule_Cytosol
-Biliverdin_simple_molecule POSITIVE Heme_simple_molecule_Cytosol
-PRIN9_simple_molecule_Mitochondrial Matrix POSITIVE Heme_simple_molecule_Mitochondrial Matrix
-FECH POSITIVE Heme_simple_molecule_Mitochondrial Matrix
-Pb2+_ion NEGATIVE Heme_simple_molecule_Mitochondrial Matrix
-dALA_simple_molecule_Mitochondrial Matrix NEGATIVE Heme_simple_molecule_Mitochondrial Matrix
-HMOX1_Cytosol POSITIVE Biliverdin_simple_molecule
-Bilirubin_simple_molecule POSITIVE Biliverdin_simple_molecule
-HMOX1_Cytosol POSITIVE HMOX1_Cytosol
-Orf3a POSITIVE HMOX1_Cytosol
-PRIN9_simple_molecule_Mitochondrion POSITIVE PRIN9_simple_molecule_Mitochondrial Matrix
-FECH_rna POSITIVE FECH
-SLC11A2 POSITIVE Fe2+_ion_Cytosol
-Fe2+_ion_Cytosol POSITIVE Fe2+_ion_Cytosol
-Fe(3+)O(OH)_simple_molecule POSITIVE Fe2+_ion_Cytosol
-Reactive Oxygen Species_simple_molecule POSITIVE Fe2+_ion_Cytosol
-Fe2+_ion_Endosome Lumen POSITIVE Fe2+_ion_Cytosol
-MCOLN1 POSITIVE Fe2+_ion_Cytosol
-HMOX1_rna POSITIVE HMOX1_Cytosol
-BLVRB POSITIVE Bilirubin_simple_molecule
-BLVRB_rna POSITIVE BLVRB
-Orf9c POSITIVE ABCC1
-PKC POSITIVE NRF2_phosphorylated_Cytosol
-PPGEN9_simple_molecule POSITIVE PRIN9_simple_molecule_Mitochondrion
-PPO:FAD_complex POSITIVE PRIN9_simple_molecule_Mitochondrion
-SUCC-CoA_simple_molecule POSITIVE dALA_simple_molecule_Mitochondrial Matrix
-ALAS1:ALAS2_complex POSITIVE dALA_simple_molecule_Mitochondrial Matrix
-Panhematin_drug NEGATIVE dALA_simple_molecule_Mitochondrial Matrix
-dALA_simple_molecule_Cytosol POSITIVE dALA_simple_molecule_Mitochondrial Matrix
-PBG_simple_molecule POSITIVE dALA_simple_molecule_Cytosol
-ALAD:Zn2+_complex POSITIVE PBG_simple_molecule
-HMBL_simple_molecule POSITIVE PBG_simple_molecule
-HMBS:DIPY_complex POSITIVE HMBL_simple_molecule
-URO3_simple_molecule POSITIVE HMBL_simple_molecule
-UROS POSITIVE URO3_simple_molecule
-COPRO3_simple_molecule_Cytosol POSITIVE URO3_simple_molecule
-UROD POSITIVE COPRO3_simple_molecule_Cytosol
-COPRO3_simple_molecule_Mitochondrion POSITIVE COPRO3_simple_molecule_Cytosol
-PPGEN9_simple_molecule POSITIVE COPRO3_simple_molecule_Mitochondrion
-CPOX POSITIVE PPGEN9_simple_molecule
-Lipid Peroxide_simple_molecule POSITIVE Ferroptosis_phenotype
-Poly-unsaturated fatty acid_simple_molecule POSITIVE Lipid Peroxide_simple_molecule
-Reactive Oxygen Species_simple_molecule POSITIVE Lipid Peroxide_simple_molecule
-Lipid alcohol_simple_molecule POSITIVE Lipid Peroxide_simple_molecule
-GPX4 POSITIVE Lipid alcohol_simple_molecule
-Fe2+_ion_Endosome Lumen POSITIVE Fe3+_ion
-STEAP3 POSITIVE Fe2+_ion_Endosome Lumen

Executable Modules/SBML_Qual_build/sif/Interferon1_stable.sbml.sif

-IFNAR_complex POSITIVE IFNA1_IFNAR_complex
-JAK1_TYK2_complex POSITIVE IFNA1_IFNAR_complex
-IFNB1_IFNAR_complex POSITIVE IFNAR_complex
-JAK1_TYK2_complex POSITIVE IFNB1_IFNAR_complex
-STAT1 POSITIVE STAT1/2_IRF9_complex
-Orf6 NEGATIVE STAT1/2_IRF9_complex
-TREML4 POSITIVE STAT1/2_IRF9_complex
-JAK1_TYK2_complex POSITIVE STAT1/2_IRF9_complex
-ISRE_complex POSITIVE STAT1/2_IRF9_complex
-IRF3_cytoplasm NEGATIVE Orf6
-MYD88_TCAM1_complex POSITIVE TREML4
-JAK1 POSITIVE JAK1_TYK2_complex
-Azithromycin_drug NEGATIVE ISRE_complex
-OAS1_rna POSITIVE ISRE_complex
-EIF2AK_rna POSITIVE ISRE_complex
-OAS2_rna POSITIVE ISRE_complex
-OAS3_rna POSITIVE ISRE_complex
-AP-1_complex_nucleus NEGATIVE Azithromycin_drug
-p50_p65_complex_nucleus NEGATIVE Azithromycin_drug
-NFKB1_nucleus NEGATIVE Azithromycin_drug
-JUN POSITIVE AP-1_complex_cytoplasm
-E POSITIVE AP-1_complex_cytoplasm
-MAPK8/14_complex POSITIVE AP-1_complex_cytoplasm
-AP-1_complex_nucleus POSITIVE AP-1_complex_cytoplasm
-NFKB_NFKBIA_complex POSITIVE E
-NLRP3_inflammasome_complex POSITIVE E
-MAPK14 POSITIVE MAPK8/14_complex
-TBK1 POSITIVE MAPK8/14_complex
-MAP3K7 POSITIVE MAPK8/14_complex
-RELA POSITIVE p50_p65_complex_cytoplasm
-IKK_complex POSITIVE p50_p65_complex_cytoplasm
-N_cytoplasm NEGATIVE p50_p65_complex_cytoplasm
-TBK1 POSITIVE p50_p65_complex_cytoplasm
-p50_p65_complex_nucleus POSITIVE p50_p65_complex_cytoplasm
-NFKB_NFKBIA_complex NEGATIVE IKK_complex
-TRAF6_ubiquitinated POSITIVE IKK_complex
-RIPK1 POSITIVE IKK_complex
-M_cytoplasm NEGATIVE IKK_complex
-NFKB_NFKBIA_complex POSITIVE N_cytoplasm
-TBK1_IKBKE_complex POSITIVE TBK1
-IKBKE POSITIVE TBK1
-STING1_ubiquitinated POSITIVE TBK1
-MAVS POSITIVE TBK1
-IRF3_cytoplasm POSITIVE TBK1
-OAS1_cytoplasm POSITIVE OAS1_EIF2AK_complex
-Immune Response_phenotype POSITIVE OAS1_EIF2AK_complex
-OAS1_cytoplasm POSITIVE OAS1_cytoplasm
-Nsp15_cytoplasm NEGATIVE OAS1_cytoplasm
-NFKB1_cytoplasm POSITIVE NFKB_NFKBIA_complex
-Nsp1 POSITIVE NFKB_NFKBIA_complex
-S POSITIVE NFKB_NFKBIA_complex
-Orf7a POSITIVE NFKB_NFKBIA_complex
-Orf3a POSITIVE NFKB_NFKBIA_complex
-NFKBIA_cytoplasm POSITIVE NFKB_NFKBIA_complex
-Nsp13 POSITIVE TBK1_IKBKE_complex
-TRAF3 POSITIVE TBK1_IKBKE_complex
-Nsp3 NEGATIVE TBK1_IKBKE_complex
-TRAF3_TANK_TBK1_IKKepsilon_complex POSITIVE TBK1_IKBKE_complex
-MAVS POSITIVE TBK1_IKBKE_complex
-TRAF3_TBK1_IKBKE_complex_cytoplasm POSITIVE TBK1_IKBKE_complex
-IRF3_cytoplasm POSITIVE TBK1_IKBKE_complex
-IRF7_cytoplasm POSITIVE TBK1_IKBKE_complex
-MYD88_TCAM1_complex POSITIVE TRAF3
-Nsp3 NEGATIVE TRAF3
-TRAF6_ubiquitinated NEGATIVE Nsp3
-Immune Response_phenotype POSITIVE Nsp3
-IKBKE NEGATIVE Nsp3
-IRF3_cytoplasm NEGATIVE Nsp3
-GRL0617_drug NEGATIVE Nsp3
-TRAF3_TBK1_IKBKE_complex_cytoplasm POSITIVE TRAF3_TANK_TBK1_IKKepsilon_complex
-M_cytoplasm NEGATIVE TRAF3_TANK_TBK1_IKKepsilon_complex
-IKBKE POSITIVE MAVS
-IRF3_cytoplasm POSITIVE MAVS
-RIPK1 POSITIVE MAVS
-RIG1_MDA5_complex POSITIVE MAVS
-Orf9b NEGATIVE MAVS
-ITCH NEGATIVE MAVS
-STING1_ubiquitinated POSITIVE MAVS
-MYD88 POSITIVE MYD88_TCAM1_complex
-TLR7 POSITIVE MYD88_TCAM1_complex
-TRAF6_ubiquitinated POSITIVE MYD88_TCAM1_complex
-RIPK1 POSITIVE MYD88_TCAM1_complex
-PAMP signalling_phenotype POSITIVE TLR7
-TRAF3_TBK1_IKBKE_complex_cytoplasm POSITIVE TRAF3_TBK1_IKBKE_complex_cytoplasm
-STING1_ubiquitinated POSITIVE TRAF3_TBK1_IKBKE_complex_cytoplasm
-pp1ab NEGATIVE TRAF3_TBK1_IKBKE_complex_cytoplasm
-IRF3_cytoplasm POSITIVE TRAF3_TBK1_IKBKE_complex_cytoplasm
-pp1ab NEGATIVE TRAF3_TBK1_IKBKE_complex_cytoplasm
-IRF3_cytoplasm NEGATIVE pp1ab
-STING1_ubiquitinated NEGATIVE pp1ab
-DDX58_ubiquitinated POSITIVE RIG1_MDA5_complex
-Viral dsRNA_rna POSITIVE RIG1_MDA5_complex
-N_cytoplasm NEGATIVE RIG1_MDA5_complex
-Nsp15_cytoplasm NEGATIVE RIG1_MDA5_complex
-M_cytoplasm NEGATIVE RIG1_MDA5_complex
-N_cytoplasm NEGATIVE DDX58_ubiquitinated
-TRIM25 POSITIVE DDX58_ubiquitinated
-RNF135 POSITIVE DDX58_ubiquitinated
-Viral replication_phenotype POSITIVE Viral dsRNA_rna
-IRF3_cytoplasm NEGATIVE N_cytoplasm
-IFIH1 NEGATIVE Nsp15_cytoplasm
-p50_p65_complex_nucleus POSITIVE NLRP3_inflammasome_complex
-Inflammation_phenotype POSITIVE NLRP3_inflammasome_complex
-IFNB1_rna POSITIVE p50_p65_complex_nucleus
-IFNA1_rna POSITIVE p50_p65_complex_nucleus
-Immune Response_phenotype POSITIVE p50_p65_complex_nucleus
-Inflammation_phenotype POSITIVE p50_p65_complex_nucleus
-ITCH NEGATIVE TRAF6_ubiquitinated
-MAP3K7 POSITIVE TRAF6_ubiquitinated
-TCAM1 POSITIVE RIPK1
-IFNB1_rna POSITIVE AP-1_complex_nucleus
-IFNA1_rna POSITIVE AP-1_complex_nucleus
-IFNB1_rna POSITIVE IFNB1_cytoplasm
-IFNB1_Extracellular Space POSITIVE IFNB1_cytoplasm
-NFKB1_nucleus POSITIVE IFNB1_rna
-IFNA1_rna POSITIVE IFNA1_cytoplasm
-IFNA1_Extracellular Space POSITIVE IFNA1_cytoplasm
-NFKB1_nucleus POSITIVE IFNA1_rna
-IRF3_nucleus POSITIVE OAS1_rna
-OAS1_cytoplasm POSITIVE OAS1_rna
-EIF2AK_rna POSITIVE IRF3_nucleus
-OAS2_rna POSITIVE IRF3_nucleus
-OAS3_rna POSITIVE IRF3_nucleus
-Immune Response_phenotype POSITIVE IRF3_nucleus
-IRF3_cytoplasm POSITIVE IRF3_nucleus
-EIF2AK POSITIVE EIF2AK_rna
-EIF2AK NEGATIVE Nsp15_cytoplasm
-OAS2_cytoplasm NEGATIVE Nsp15_cytoplasm
-OAS3_cytoplasm NEGATIVE Nsp15_cytoplasm
-Orf9b POSITIVE ITCH
-OAS2_cytoplasm POSITIVE OAS2_rna
-OAS2_cytoplasm POSITIVE OAS2_cytoplasm
-OAS3_cytoplasm POSITIVE OAS3_rna
-OAS3_cytoplasm POSITIVE OAS3_cytoplasm
-IRF7_nucleus POSITIVE Immune Response_phenotype
-IRF7_cytoplasm POSITIVE IRF7_nucleus
-Orf8_complex NEGATIVE IRF3_cytoplasm

Executable Modules/SBML_Qual_build/sif/JNK_pathway_stable.sbml.sif

-JNK_complex_Cytoplasm POSITIVE JNK_complex_Cytoplasm
-MAP2K4_phosphorylated POSITIVE JNK_complex_Cytoplasm
-MAP2K7_phosphorylated POSITIVE JNK_complex_Cytoplasm
-7a POSITIVE JNK_complex_Cytoplasm
-3a POSITIVE JNK_complex_Cytoplasm
-S POSITIVE JNK_complex_Cytoplasm
-AP-1_complex POSITIVE JNK_complex_Cytoplasm
-BCL2_phosphorylated POSITIVE JNK_complex_Cytoplasm
-ATF2_phosphorylated POSITIVE JNK_complex_Cytoplasm
-TP53_phosphorylated POSITIVE JNK_complex_Cytoplasm
-MEKK1/4_complex POSITIVE MAP2K4_phosphorylated
-SARS-CoV-1 proteins_complex POSITIVE MAP2K4_phosphorylated
-MLK1/2/3_complex POSITIVE MAP2K7_phosphorylated
-SARS-CoV-1 proteins_complex POSITIVE MAP2K7_phosphorylated
-SARS-CoV-1 proteins_complex POSITIVE MLK1/2/3_complex
-MEKK1/4_complex POSITIVE SARS-CoV-1 proteins_complex
-3b POSITIVE AP-1_complex
-Innate Immunity_phenotype POSITIVE AP-1_complex
-Apoptosis_phenotype POSITIVE BCL2_phosphorylated
-Autophagy_phenotype POSITIVE BCL2_phosphorylated
-TP53 signalling_phenotype POSITIVE TP53_phosphorylated

Executable Modules/SBML_Qual_build/sif/Nsp14_stable.sbml.sif

-SIRT5 POSITIVE SIRT5:Nsp14_complex
-Nsp14_Mitochondria POSITIVE SIRT5:Nsp14_complex
-Nicotinamide_simple_molecule POSITIVE SIRT5:Nsp14_complex
-Nicotinamide_simple_molecule POSITIVE SIRT5
-Urea cycle_phenotype POSITIVE SIRT5
-Nsp14_cytosol POSITIVE GLA:Nsp14_complex
-GLA POSITIVE GLA:Nsp14_complex
-D-Galactose_simple_molecule POSITIVE GLA:Nsp14_complex
-_alpha_-D-Glucose_simple_molecule_cytosol POSITIVE GLA:Nsp14_complex
-Raffinose_simple_molecule POSITIVE GLA:Nsp14_complex
-D-Galactose_simple_molecule POSITIVE GLA
-_alpha_-D-Glucose_simple_molecule_cytosol POSITIVE GLA
-Raffinose_simple_molecule POSITIVE GLA
-Nsp14_cytosol POSITIVE IMPDH2:Nsp14_complex
-IMPDH2 POSITIVE IMPDH2:Nsp14_complex
-XMP_simple_molecule POSITIVE IMPDH2:Nsp14_complex
-XMP_simple_molecule POSITIVE IMPDH2
-Guanine nucleotide synthesis_phenotype POSITIVE IMPDH2
-Lactose_simple_molecule POSITIVE D-Galactose_simple_molecule
-GLB1 POSITIVE D-Galactose_simple_molecule
-LCT POSITIVE D-Galactose_simple_molecule
-Galacitol_simple_molecule POSITIVE D-Galactose_simple_molecule
-AKR1B1 POSITIVE D-Galactose_simple_molecule
-Raffinose_simple_molecule POSITIVE D-Galactose_simple_molecule
-Migalastat_drug NEGATIVE D-Galactose_simple_molecule
-_alpha_-D-Galactose_simple_molecule POSITIVE D-Galactose_simple_molecule
-UDP-_alpha_-D-Galactose_simple_molecule POSITIVE Lactose_simple_molecule
-lactose synthetase_complex POSITIVE Lactose_simple_molecule
-Stachyose_simple_molecule POSITIVE Raffinose_simple_molecule
-Migalastat_drug NEGATIVE Raffinose_simple_molecule
-_alpha_-D-Glucose_simple_molecule_cytosol NEGATIVE Migalastat_drug
-GALM POSITIVE _alpha_-D-Galactose_simple_molecule
-_alpha_-D-Galactose-1P_simple_molecule POSITIVE _alpha_-D-Galactose_simple_molecule
-GALK1 POSITIVE _alpha_-D-Galactose-1P_simple_molecule
-UDP-_alpha_-D-Galactose_simple_molecule POSITIVE _alpha_-D-Galactose-1P_simple_molecule
-GALT POSITIVE UDP-_alpha_-D-Galactose_simple_molecule
-UDP-_alpha_-D-Glucose_simple_molecule POSITIVE UDP-_alpha_-D-Galactose_simple_molecule
-GALE POSITIVE UDP-_alpha_-D-Galactose_simple_molecule
-_alpha_-D-Glucose-1-P_simple_molecule POSITIVE UDP-_alpha_-D-Glucose_simple_molecule
-UGP2 POSITIVE _alpha_-D-Glucose-1-P_simple_molecule
-Melibiose_simple_molecule POSITIVE _alpha_-D-Glucose_simple_molecule_cytosol
-NAD_simple_molecule_cytosol POSITIVE NADP_simple_molecule_cytosol
-NADK POSITIVE NADP_simple_molecule_cytosol
-Nicotinamide_simple_molecule POSITIVE NAD_simple_molecule_cytosol
-Nicotinamide D-ribonucleotide_simple_molecule POSITIVE NAD_simple_molecule_cytosol
-Deamino-NAD_simple_molecule POSITIVE NAD_simple_molecule_cytosol
-NADSYN1 POSITIVE NAD_simple_molecule_cytosol
-NMNAT2 POSITIVE NAD_simple_molecule_cytosol
-NMNAT1 POSITIVE NAD_simple_molecule_cytosol
-NMNAT3 POSITIVE NAD_simple_molecule_cytosol
-NADH_simple_molecule_cytosol POSITIVE NAD_simple_molecule_cytosol
-Nicotinate_simple_molecule POSITIVE Nicotinamide_simple_molecule
-CD38_cytosol POSITIVE Nicotinamide_simple_molecule
-N-Ribosyl-nicotinamide_simple_molecule POSITIVE Nicotinamide_simple_molecule
-PNP_cytosol POSITIVE Nicotinamide_simple_molecule
-CD38_cytosol POSITIVE Nicotinamide_simple_molecule
-Nicotinamide D-ribonucleotide_simple_molecule POSITIVE Nicotinamide_simple_molecule
-Nicotinate D-ribonucleotide_simple_molecule POSITIVE Nicotinate_simple_molecule
-Nicotinamide D-ribonucleotide_simple_molecule POSITIVE N-Ribosyl-nicotinamide_simple_molecule
-NT5E_cytosol POSITIVE N-Ribosyl-nicotinamide_simple_molecule
-ENPP1_cytosol POSITIVE Nicotinamide D-ribonucleotide_simple_molecule
-ENPP3_cytosol POSITIVE Nicotinamide D-ribonucleotide_simple_molecule
-NRK1 POSITIVE Nicotinamide D-ribonucleotide_simple_molecule
-NAMPT POSITIVE Nicotinamide D-ribonucleotide_simple_molecule
-Nicotinate D-ribonucleotide_simple_molecule POSITIVE Deamino-NAD_simple_molecule
-NMNAT1 POSITIVE Deamino-NAD_simple_molecule
-NMNAT2 POSITIVE Deamino-NAD_simple_molecule
-NMNAT3 POSITIVE Deamino-NAD_simple_molecule
-Quinolinate_simple_molecule POSITIVE Nicotinate D-ribonucleotide_simple_molecule
-QPRT POSITIVE Nicotinate D-ribonucleotide_simple_molecule
-NAPRT1 POSITIVE Nicotinate D-ribonucleotide_simple_molecule
-NNT POSITIVE NADH_simple_molecule_cytosol
-D-Ribose 5P_simple_molecule POSITIVE 5-phospho-_alpha_-D-ribose 1-diphosphate_simple_molecule_cytosol
-PRPS1 POSITIVE 5-phospho-_alpha_-D-ribose 1-diphosphate_simple_molecule_cytosol
-PRPS2 POSITIVE 5-phospho-_alpha_-D-ribose 1-diphosphate_simple_molecule_cytosol
-PRPS1L1 POSITIVE 5-phospho-_alpha_-D-ribose 1-diphosphate_simple_molecule_cytosol
-5-phospho-beta-D-ribosylamine_simple_molecule POSITIVE 5-phospho-_alpha_-D-ribose 1-diphosphate_simple_molecule_cytosol
-_alpha_D-Ribose 1P_simple_molecule POSITIVE D-Ribose 5P_simple_molecule
-PGM2 POSITIVE D-Ribose 5P_simple_molecule
-PPAT POSITIVE 5-phospho-beta-D-ribosylamine_simple_molecule
-5-phospho-beta-D-ribosylglycinamide_simple_molecule POSITIVE 5-phospho-beta-D-ribosylamine_simple_molecule
-GART POSITIVE 5-phospho-beta-D-ribosylglycinamide_simple_molecule
-5-phosphoribosyl-N-formylglycinamide_simple_molecule POSITIVE 5-phospho-beta-D-ribosylglycinamide_simple_molecule
-5-phosphoribosyl-N-formylglycinamide_simple_molecule POSITIVE GART
-Aminoimidazole ribotide_simple_molecule POSITIVE GART
-2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine_simple_molecule POSITIVE 5-phosphoribosyl-N-formylglycinamide_simple_molecule
-PFAS POSITIVE 2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine_simple_molecule
-Aminoimidazole ribotide_simple_molecule POSITIVE 2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine_simple_molecule
-1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate_simple_molecule POSITIVE Aminoimidazole ribotide_simple_molecule
-PAICS POSITIVE 1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate_simple_molecule
-1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole_simple_molecule POSITIVE 1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate_simple_molecule
-1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole_simple_molecule POSITIVE PAICS
-1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide_simple_molecule POSITIVE 1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole_simple_molecule
-ADSL POSITIVE 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide_simple_molecule
-1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide_simple_molecule POSITIVE 1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide_simple_molecule
-ATIC POSITIVE 1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide_simple_molecule
-IMP_simple_molecule POSITIVE 1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide_simple_molecule
-IMP_simple_molecule POSITIVE ATIC
-AMP_simple_molecule_cytosol POSITIVE IMP_simple_molecule
-AMDP2 POSITIVE IMP_simple_molecule
-AMPD1 POSITIVE IMP_simple_molecule
-AMPD3 POSITIVE IMP_simple_molecule
-Hypoxanthine_simple_molecule POSITIVE IMP_simple_molecule
-HPRT1_cytosol POSITIVE IMP_simple_molecule
-XMP_simple_molecule POSITIVE IMP_simple_molecule
-GMP_simple_molecule POSITIVE IMP_simple_molecule
-Inosine_simple_molecule POSITIVE IMP_simple_molecule
-Adenosine_simple_molecule POSITIVE AMP_simple_molecule_cytosol
-ADK POSITIVE AMP_simple_molecule_cytosol
-Adenine_simple_molecule POSITIVE AMP_simple_molecule_cytosol
-APRT POSITIVE AMP_simple_molecule_cytosol
-ADP_simple_molecule_cytosol POSITIVE AMP_simple_molecule_cytosol
-Xanthine_simple_molecule POSITIVE Hypoxanthine_simple_molecule
-Inosine_simple_molecule POSITIVE Hypoxanthine_simple_molecule
-PNP_cytosol POSITIVE Hypoxanthine_simple_molecule
-Deoxyinosine_simple_molecule POSITIVE Hypoxanthine_simple_molecule
-IMPDH1 POSITIVE XMP_simple_molecule
-Mycophenolic acid_drug NEGATIVE XMP_simple_molecule
-Merimepodib_drug NEGATIVE XMP_simple_molecule
-Ribavirin_drug NEGATIVE XMP_simple_molecule
-GMP_simple_molecule POSITIVE XMP_simple_molecule
-Xanthosine_simple_molecule POSITIVE XMP_simple_molecule
-GMPS POSITIVE GMP_simple_molecule
-Guanine_simple_molecule POSITIVE GMP_simple_molecule
-HPRT1_cytosol POSITIVE GMP_simple_molecule
-GTP_simple_molecule POSITIVE GMP_simple_molecule
-ENTPD2 POSITIVE GMP_simple_molecule
-GDP_simple_molecule POSITIVE GMP_simple_molecule
-ENTPD4 POSITIVE GMP_simple_molecule
-ENTPD5 POSITIVE GMP_simple_molecule
-ENTPD6 POSITIVE GMP_simple_molecule
-CANT1 POSITIVE GMP_simple_molecule
-GMPR POSITIVE GMP_simple_molecule
-GMPR2 POSITIVE GMP_simple_molecule
-Guanosine_simple_molecule POSITIVE GMP_simple_molecule
-Deoxyguanosine_simple_molecule POSITIVE Guanine_simple_molecule
-PNP_cytosol POSITIVE Guanine_simple_molecule
-Guanosine_simple_molecule POSITIVE Guanine_simple_molecule
-Xanthine_simple_molecule POSITIVE Guanine_simple_molecule
-GDP_simple_molecule POSITIVE GTP_simple_molecule
-NME3_cytosol POSITIVE GTP_simple_molecule
-Nucleoside diphosphate kinase_complex_cytosol POSITIVE GTP_simple_molecule
-NME5_cytosol POSITIVE GTP_simple_molecule
-NME6_cytosol POSITIVE GTP_simple_molecule
-NME7_cytosol POSITIVE GTP_simple_molecule
-GDP_simple_molecule POSITIVE ENTPD2
-GUK1 POSITIVE GDP_simple_molecule
-NTPCR POSITIVE GDP_simple_molecule
-dGDP_simple_molecule POSITIVE GDP_simple_molecule
-dGDP_simple_molecule POSITIVE GUK1
-dGTP_simple_molecule POSITIVE NME3_cytosol
-dGTP_simple_molecule POSITIVE Nucleoside diphosphate kinase_complex_cytosol
-dGTP_simple_molecule POSITIVE NME5_cytosol
-dGTP_simple_molecule POSITIVE NME6_cytosol
-dGTP_simple_molecule POSITIVE NME7_cytosol
-ribonucleoside reductase_complex_cytosol POSITIVE dGDP_simple_molecule
-dGMP_simple_molecule POSITIVE dGDP_simple_molecule
-dGTP_simple_molecule POSITIVE dGDP_simple_molecule
-Deoxyguanosine_simple_molecule POSITIVE dGMP_simple_molecule
-DCK_cytosol POSITIVE dGMP_simple_molecule
-dGTP_simple_molecule POSITIVE dGMP_simple_molecule
-ENPP1_cytosol POSITIVE dGMP_simple_molecule
-ENPP3_cytosol POSITIVE dGMP_simple_molecule
-ITPA POSITIVE dGMP_simple_molecule
-NT5E_cytosol POSITIVE Guanosine_simple_molecule
-Xanthosine_simple_molecule POSITIVE NT5E_cytosol
-Inosine_simple_molecule POSITIVE Adenosine_simple_molecule
-NT5E_cytosol POSITIVE Adenosine_simple_molecule
-Adenine_simple_molecule POSITIVE Adenosine_simple_molecule
-PNP_cytosol POSITIVE Adenine_simple_molecule
-Xanthine_simple_molecule POSITIVE Xanthosine_simple_molecule
-PNP_cytosol POSITIVE Xanthine_simple_molecule
-XDH POSITIVE Xanthine_simple_molecule
-GDA POSITIVE Xanthine_simple_molecule
-NT5E_cytosol POSITIVE Inosine_simple_molecule
-ADA_cytosol POSITIVE Inosine_simple_molecule
-AK5_cytosol POSITIVE ADP_simple_molecule_cytosol
-AK7 POSITIVE ADP_simple_molecule_cytosol
-AK1 POSITIVE ADP_simple_molecule_cytosol
-AK8 POSITIVE ADP_simple_molecule_cytosol
-dADP_simple_molecule POSITIVE ADP_simple_molecule_cytosol
-PNP_cytosol POSITIVE Deoxyinosine_simple_molecule
-Deoxyadenosine_simple_molecule POSITIVE Deoxyinosine_simple_molecule
-ADA_cytosol POSITIVE Deoxyinosine_simple_molecule
-dAMP_simple_molecule POSITIVE Deoxyadenosine_simple_molecule
-DCK_cytosol POSITIVE dAMP_simple_molecule
-dADP_simple_molecule POSITIVE dAMP_simple_molecule
-AK5_cytosol POSITIVE dADP_simple_molecule
-ribonucleoside reductase_complex_cytosol POSITIVE dADP_simple_molecule
-dATP_simple_molecule POSITIVE dADP_simple_molecule
-Nucleoside diphosphate kinase_complex_cytosol POSITIVE dATP_simple_molecule
-NME5_cytosol POSITIVE dATP_simple_molecule
-NME3_cytosol POSITIVE dATP_simple_molecule
-NME6_cytosol POSITIVE dATP_simple_molecule
-NME7_cytosol POSITIVE dATP_simple_molecule

Executable Modules/SBML_Qual_build/sif/Nsp9_protein_stable.sbml.sif

-Nsp9 POSITIVE Nuclear Pore comp_complex
-mibcomp_complex POSITIVE Nsp9
-mat2bcomp_complex POSITIVE Nsp9
-nek9comp_complex POSITIVE Nsp9
-gtf2f2comp_complex POSITIVE Nsp9
-spartcomp_complex POSITIVE Nsp9
-znfcomp_complex POSITIVE Nsp9
-eifcomp_complex POSITIVE Nsp9
-dcafcomp_complex POSITIVE Nsp9
-Vpr POSITIVE COPS_complex_nucleus
-nup2_complex POSITIVE Nuclear Pore_complex
-NUP214 POSITIVE nup2_complex
-ZNF503 POSITIVE dcafznf_complex
-Nsp8 POSITIVE NspComp_complex
-NUP54 POSITIVE nup1_complex
-BAG6 POSITIVE EDN1-homo_complex_nucleus
-NEK9 POSITIVE NEKs_complex
-GTF2F2 POSITIVE gtfrnapoly_complex
-TAT-HIV_complex POSITIVE GTF2F2
-EDN1-homo_complex_nucleus POSITIVE EDN1-homo_complex_ER
-EDN1-homo_complex_nucleus POSITIVE EDN1-homo_complex_nucleus
-EDN1_nucleus POSITIVE EDN1-homo_complex_nucleus
-EDN1-homo_complex_nucleus POSITIVE EDN1-homo_complex_nucleus
-EDN1-homo_complex_ER POSITIVE EDN1-homo_complex_nucleus
-EDN1_rna POSITIVE EDN1_nucleus
-COPS2 POSITIVE COPS_complex_nucleus
-SPART POSITIVE SPARTcomp_complex
-MAT1A POSITIVE MAT_complex
-SAdComp_complex POSITIVE MAT1A
-MAT2B POSITIVE NEC1_complex
-MIB1 POSITIVE MIBcomp_complex
-PTGS2 POSITIVE PTGScomp_complex
-MAT2A POSITIVE SAdComp2_complex
-AIFM1 POSITIVE AIFMFlaComp_complex
-EDNRA POSITIVE EDNRASitaComp_complex
-EDNRAmbComp_complex POSITIVE EDNRA
-EDNRAcetComp_complex POSITIVE EDNRA
-EDNRMacComp_complex POSITIVE EDNRA
-EDN1_rna POSITIVE EDN1_nucleus
-DCAF7 POSITIVE EDN1_rna

Executable Modules/SBML_Qual_build/sif/Orf3a_stable.sbml.sif

-Orf3a POSITIVE Hops Complex_complex
-P65/P015_complex POSITIVE Orf3a
-TRIM59 POSITIVE Orf3a
-PYCARD_ubiquitinated_ubiquitinated_ubiquitinated POSITIVE Orf3a
-S POSITIVE Orf3a
-LPS/TNF α/IL-1_complex POSITIVE IKBKG/IKBKB/CHUK_complex
-P65/P015_complex POSITIVE IKBKG/IKBKB/CHUK_complex
-TLR4 POSITIVE LPS/TLR4/MYD88_complex
-TRAF6_cytoplasm POSITIVE LPS/TLR4/MYD88_complex
-E_cytoplasm POSITIVE P65/P015_complex
-TRAF3 POSITIVE P65/P015_complex
-IL1b_cytoplasm POSITIVE P65/P015_complex
-IL1b_cytoplasm POSITIVE P65/P015_complex
-PYCARD_ubiquitinated_ubiquitinated_ubiquitinated POSITIVE TRAF3
-TICAM1 POSITIVE TRAF3
-TRIM30a/TRIM38_complex NEGATIVE TAB2/TAB3/TAK1_complex
-TRAF6_cytoplasm POSITIVE TAB2/TAB3/TAK1_complex
-NEMO/IKKA/IKKB_complex POSITIVE TAB2/TAB3/TAK1_complex
-SERPINF2 POSITIVE TAB2/TAB3/TAK1_complex
-TRAF6_cytoplasm POSITIVE TRAF6_cytoplasm
-MYD88_cytoplasm POSITIVE TRAF6_cytoplasm
-TRIM38_cytoplasm NEGATIVE TRAF6_cytoplasm
-TRIM23 POSITIVE TRAF6_cytoplasm
-ssRNA_rna POSITIVE TLR7/8/9_complex
-MYD88_cytoplasm POSITIVE TLR7/8/9_complex
-TRIM22 NEGATIVE NEMO/IKKA/IKKB_complex
-TRIM29 NEGATIVE NEMO/IKKA/IKKB_complex
-TRIM14/TRIM23_complex POSITIVE NEMO/IKKA/IKKB_complex
-TRIM27/TRIM21_complex NEGATIVE NEMO/IKKA/IKKB_complex
-NFKBIA_phosphorylated_ubiquitinated_ubiquitinated_ubiquitinated POSITIVE NEMO/IKKA/IKKB_complex
-NFKB1 POSITIVE NFKB1:NFKNIA_complex
-CACTIN NEGATIVE NFKB1:NFKNIA_complex
-TRIM39 POSITIVE CACTIN
-MYD88_cytoplasm NEGATIVE TRIM59
-ORF8b POSITIVE NLRP3
-TLR3 POSITIVE TICAM1
-TRIM38_cytoplasm NEGATIVE TICAM1
-IL1b_cytoplasm POSITIVE CASP1
-double-stranded RNA_rna POSITIVE TLR3
-BTRC POSITIVE NFKBIA_phosphorylated_ubiquitinated_ubiquitinated_ubiquitinated
-TRIM9 NEGATIVE BTRC
-IFNB1 POSITIVE SERPINF2
-IL1b_cytoplasm POSITIVE IL1b_cytoplasm
-E_cytoplasm POSITIVE IL1b_cytoplasm

Executable Modules/SBML_Qual_build/sif/PAMP_signaling_stable.sbml.sif

-MYD88 POSITIVE MYD88:IRAK:TRAF_complex
-IRF7_phosphorylated POSITIVE MYD88:IRAK:TRAF_complex
-TRAF6_ubiquitinated POSITIVE MYD88:IRAK:TRAF_complex
-TLR7:ssRNA_complex POSITIVE MYD88
-TLR8:ssRNA_complex POSITIVE MYD88
-TRAF2 POSITIVE MAVS:TRAF_complex
-TRAF6_ubiquitinated POSITIVE MAVS:TRAF_complex
-MAVS POSITIVE MAVS:TRADD_complex
-TANK:TRAF3:IKBKE_complex_Cell POSITIVE MAVS:TRADD_complex
-RIPK1:FADD_complex POSITIVE MAVS:TRADD_complex
-DDX58_ubiquitinated POSITIVE MAVS
-IFIH1:dsRNA_complex POSITIVE MAVS
-TICAM1_Cell POSITIVE TICAM1:TRAF3:TRAF6_complex
-TANK:TRAF3:IKBKE_complex_Cell POSITIVE TICAM1:TRAF3:TRAF6_complex
-MAP3K7 POSITIVE TICAM1:TRAF3:TRAF6_complex
-TLR3:dsRNA_complex POSITIVE TICAM1_Cell
-IKBKG POSITIVE IKK Complex_complex_Cell
-IKK Complex_complex_Cell POSITIVE IKK Complex_complex_Cell
-NFKBIA POSITIVE NFKB:NFKBIA_complex_Cell
-NFKB:NFKBIA_complex_Cell POSITIVE NFKB:NFKBIA_complex_Cell
-Nsp3_Cell NEGATIVE TANK:TRAF3:IKBKE_complex_Cell
-M_Cell NEGATIVE TANK:TRAF3:IKBKE_complex_Cell
-TBK1_Cell POSITIVE TANK:TRAF3:IKBKE_complex_Cell
-TANK:TRAF3:IKBKE_complex_Cell POSITIVE TANK:TRAF3:IKBKE_complex_Cell
-M_Cell NEGATIVE TANK:TRAF3:IKBKE_complex_Cell
-TBK1_Cell POSITIVE TANK:TRAF3:IKBKE_complex_Cell
-IKBKE_Cell POSITIVE TANK:TRAF3:IKBKE_complex_Cell
-TRAF3 POSITIVE TANK:TRAF3:IKBKE_complex_Cell
-CASP10 POSITIVE RIPK1:FADD_complex
-CASP8 POSITIVE RIPK1:FADD_complex
-dsRNA_rna_endosome POSITIVE TLR3:dsRNA_complex
-TLR7 POSITIVE TLR7:ssRNA_complex
-TLR8 POSITIVE TLR8:ssRNA_complex
-dsRNA_rna_Cell POSITIVE DDX58:dsRNA_complex
-M_Cell NEGATIVE DDX58:dsRNA_complex
-Nsp3_Cell NEGATIVE DDX58:dsRNA_complex
-DDX58_ubiquitinated POSITIVE DDX58:dsRNA_complex
-IFIH1:dsRNA_complex NEGATIVE M_Cell
-IFIH1:dsRNA_complex NEGATIVE Nsp3_Cell
-dsRNA_rna_Cell POSITIVE IFIH1:dsRNA_complex
-Nsp15_Cell NEGATIVE IFIH1:dsRNA_complex
-MAP2K7_phosphorylated POSITIVE JNK_complex
-MAP2K4_phosphorylated POSITIVE JNK_complex
-AP1_complex POSITIVE JNK_complex
-MAP3K7 POSITIVE MAP2K7_phosphorylated
-MAP3K7 POSITIVE MAP2K4_phosphorylated
-NFKB:NFKBIA_complex_Cell POSITIVE NFKB_complex
-N_Cell POSITIVE NFKB_complex
-transcription of proinflammatory proteins_phenotype POSITIVE NFKB_complex
-IKK Complex_complex_Cell POSITIVE NFKB:NFKBIA_complex_Cell
-NFKBIA_phosphorylated POSITIVE NFKB:NFKBIA_complex_Cell
-NFKBIA_phosphorylated POSITIVE N_Cell
-dsRNA_rna_Cell POSITIVE EIF2AK2:dsRNA_complex
-Nsp15_Cell NEGATIVE EIF2AK2:dsRNA_complex
-MAP2K6_phosphorylated POSITIVE EIF2AK2:dsRNA_complex
-TRAF6_ubiquitinated POSITIVE IKK Complex_complex_Cell
-CASP8 POSITIVE IKK Complex_complex_Cell
-M_Cell NEGATIVE IKK Complex_complex_Cell
-CASP10 POSITIVE IKK Complex_complex_Cell
-TRAF6_Cell POSITIVE TRAF6_ubiquitinated
-UBE2N POSITIVE TRAF6_ubiquitinated
-MAP3K7 POSITIVE TRAF6_ubiquitinated
-MAPK14_phosphorylated POSITIVE AP1_complex
-transcription of proinflammatory proteins_phenotype POSITIVE AP1_complex
-MAP2K6_phosphorylated POSITIVE MAPK14_phosphorylated
-MAP2K3_phosphorylated POSITIVE MAPK14_phosphorylated
-IRF3_phosphorylated_nucleus POSITIVE TBK1_Cell
-Nsp3_Cell NEGATIVE IKBKE_Cell
-IRF7_phosphorylated POSITIVE IKBKE_Cell
-RNF135 POSITIVE DDX58_ubiquitinated
-TRIM25 POSITIVE DDX58_ubiquitinated
-N_Cell NEGATIVE DDX58_ubiquitinated
-IRF3_phosphorylated_nucleus POSITIVE TBK1_Cell
-transcription of proinflammatory proteins_phenotype POSITIVE IRF3_phosphorylated_nucleus
-transcription of proinflammatory proteins_phenotype POSITIVE IRF7_phosphorylated
-Nsp3_Cell NEGATIVE IRF3_phosphorylated_nucleus
-Orf3b POSITIVE IRF3_phosphorylated_nucleus
-Orf8 POSITIVE IRF3_phosphorylated_nucleus
-transcription of proinflammatory proteins_phenotype POSITIVE IRF3_phosphorylated_nucleus
-Nsp3_Cell POSITIVE TRAF6_Cell
-MAP2K6_phosphorylated POSITIVE MAP3K7
-MAP2K3_phosphorylated POSITIVE MAP3K7
-Orf9 POSITIVE ITCH

Executable Modules/SBML_Qual_build/sif/Pyrimidine_deprivation_stable.sbml.sif

-MRE11:RAD50:DNA_complex_Pulmonary endothelial cell POSITIVE MRE11:RAD50:DNA_complex_Endoplamatic reticulum
-STING_Perinuclear Golgi POSITIVE MRE11:RAD50:DNA_complex_Endoplamatic reticulum
-dsDNA_simple_molecule POSITIVE MRE11:RAD50:DNA_complex_Pulmonary endothelial cell
-MRE11 POSITIVE MRE11:RAD50:DNA_complex_Pulmonary endothelial cell
-TBK1 POSITIVE STING:TBK1_complex_Perinuclear Golgi
-cGAMP:STING_complex_Perinuclear Golgi POSITIVE STING:TBK1_complex_Perinuclear Golgi
-STING_Perinuclear Golgi POSITIVE STING:TBK1_complex_Perinuclear Golgi
-STING:TBK1_complex_Endolysozome POSITIVE STING:TBK1_complex_Perinuclear Golgi
-cGAMP:STING_complex_Endoplamatic reticulum POSITIVE cGAMP:STING_complex_Perinuclear Golgi
-STING_Endoplamatic reticulum POSITIVE STING_Perinuclear Golgi
-cGAMP_simple_molecule POSITIVE cGAMP:STING_complex_Endoplamatic reticulum
-STING_Endoplamatic reticulum POSITIVE cGAMP:STING_complex_Endoplamatic reticulum
-cGAMP-STING_complex POSITIVE cGAMP:STING_complex_Endoplamatic reticulum
-IRF3_phosphorylated POSITIVE STING:TBK1_complex_Endolysozome
-NF-kB_complex POSITIVE IFNA1 expression complex_complex
-IFNB1_rna POSITIVE IFNA1 expression complex_complex
-IFNA1_rna POSITIVE IFNA1 expression complex_complex
-cGAS:dsDNA_complex POSITIVE dsDNA_simple_molecule
-DNA_gene POSITIVE dsDNA_simple_molecule
-WIPI2 POSITIVE cGAMP:STING:LC3_complex
-cGAMP-STING_complex POSITIVE cGAMP:STING:LC3_complex
-SAR1A POSITIVE cGAMP-STING_complex
-ATP_simple_molecule_Pulmonary endothelial cell POSITIVE cGAMP_simple_molecule
-GTP_simple_molecule POSITIVE cGAMP_simple_molecule
-cGAS:dsDNA_complex POSITIVE cGAMP_simple_molecule
-cGAS POSITIVE cGAS:dsDNA_complex
-L-Gln_simple_molecule POSITIVE CAP_space_simple_molecule
-CAD POSITIVE CAP_space_simple_molecule
-N-carbamoyl-L-aspartate_simple_molecule POSITIVE CAP_space_simple_molecule
-N-carbamoyl-L-aspartate_simple_molecule POSITIVE CAD
-(S)-dihydroorotate_simple_molecule POSITIVE CAD
-(S)-dihydroorotate_simple_molecule POSITIVE N-carbamoyl-L-aspartate_simple_molecule
-orotate_simple_molecule POSITIVE (S)-dihydroorotate_simple_molecule
-induction of cellular immune response_phenotype POSITIVE (S)-dihydroorotate_simple_molecule
-dihydroorotate_space_dehydrogenase_space_holoenzyme_simple_molecule POSITIVE orotate_simple_molecule
-P1788_simple_molecule NEGATIVE orotate_simple_molecule
-Teriflunomide_drug NEGATIVE orotate_simple_molecule
-orotidine_space_5'-monophosphate_simple_molecule POSITIVE orotate_simple_molecule
-UMPS POSITIVE orotidine_space_5'-monophosphate_simple_molecule
-UMP_simple_molecule POSITIVE orotidine_space_5'-monophosphate_simple_molecule
-UMP_simple_molecule POSITIVE UMPS
-uridine_simple_molecule POSITIVE UMP_simple_molecule
-UCK POSITIVE UMP_simple_molecule
-UDP_simple_molecule POSITIVE UMP_simple_molecule
-cytidine_simple_molecule POSITIVE uridine_simple_molecule
-CDA POSITIVE uridine_simple_molecule
-CMP_simple_molecule POSITIVE UCK
-CMP_simple_molecule POSITIVE cytidine_simple_molecule
-CDP_simple_molecule POSITIVE CMP_simple_molecule
-CMPK POSITIVE UDP_simple_molecule
-UTP_simple_molecule POSITIVE UDP_simple_molecule
-dUDP_simple_molecule POSITIVE UDP_simple_molecule
-CDP_simple_molecule POSITIVE CMPK
-CTP_simple_molecule POSITIVE CDP_simple_molecule
-dCDP_simple_molecule POSITIVE CDP_simple_molecule
-NDPK_Pulmonary endothelial cell POSITIVE UTP_simple_molecule
-CTP_simple_molecule POSITIVE UTP_simple_molecule
-RNA biosynthesis_phenotype POSITIVE UTP_simple_molecule
-CTP_simple_molecule POSITIVE NDPK_Pulmonary endothelial cell
-CTPS POSITIVE CTP_simple_molecule
-RNA biosynthesis_phenotype POSITIVE CTP_simple_molecule
-RNR POSITIVE dUDP_simple_molecule
-dUTP_simple_molecule POSITIVE dUDP_simple_molecule
-dCDP_simple_molecule POSITIVE RNR
-dCTP_simple_molecule_Pulmonary endothelial cell POSITIVE dCDP_simple_molecule
-NDPK_Pulmonary endothelial cell POSITIVE dUTP_simple_molecule
-dUMP_simple_molecule POSITIVE dUTP_simple_molecule
-dCTP_simple_molecule_Pulmonary endothelial cell POSITIVE NDPK_Pulmonary endothelial cell
-dCTP_simple_molecule_Pulmonary endothelial cell POSITIVE dCTP_simple_molecule_Pulmonary endothelial cell
-dUTPase POSITIVE dUMP_simple_molecule
-dCTP_simple_molecule_Pulmonary endothelial cell POSITIVE dUMP_simple_molecule
-dTMP_simple_molecule POSITIVE dUMP_simple_molecule
-dCTPase POSITIVE dCTP_simple_molecule_Pulmonary endothelial cell
-dCMP deaminase POSITIVE dCTP_simple_molecule_Pulmonary endothelial cell
-TS POSITIVE dTMP_simple_molecule
-dTDP_simple_molecule POSITIVE dTMP_simple_molecule
-TK POSITIVE dTDP_simple_molecule
-dTTP_simple_molecule POSITIVE dTDP_simple_molecule
-IFNB1 POSITIVE IFNB1_rna
-IFNA1_rna POSITIVE IFNA1
-DNA biosynthesis_phenotype POSITIVE DNA_gene
-virus replication_phenotype NEGATIVE DNA_gene

Executable Modules/SBML_Qual_build/sif/Renin_angiotensin_stable.sbml.sif

-AGTR1_cytoplasm POSITIVE ACE2:AGTR1_complex
-angiotensin II_simple_molecule NEGATIVE ACE2:AGTR1_complex
-AGTR1_cytoplasm POSITIVE AGTR1_cytoplasm
-angiotensin I_simple_molecule POSITIVE angiotensin II_simple_molecule
-ACE_cytoplasm POSITIVE angiotensin II_simple_molecule
-angiotensin 1-12_simple_molecule POSITIVE angiotensin II_simple_molecule
-CMA1 POSITIVE angiotensin II_simple_molecule
-KLK1 POSITIVE angiotensin II_simple_molecule
-angiotensin 1-7_simple_molecule POSITIVE angiotensin II_simple_molecule
-AGTR2_cytoplasm POSITIVE angiotensin II_simple_molecule
-angiotensin A_simple_molecule POSITIVE angiotensin II_simple_molecule
-angiotensin III_simple_molecule POSITIVE angiotensin II_simple_molecule
-AGTR1_cytoplasm POSITIVE angiotensin II_simple_molecule
-AGTR1_cytoplasm POSITIVE angiotensin II_simple_molecule
-angiotensin 3-7_simple_molecule POSITIVE angiotensin II_simple_molecule
-ACE2_cytoplasm POSITIVE ACE2-Spike complex_complex
-TMPRSS2 POSITIVE ACE2-Spike complex_complex
-viral replication cycle_phenotype POSITIVE ACE2-Spike complex_complex
-angiotensin 1-9_simple_molecule POSITIVE ACE2_cytoplasm
-angiotensin 1-7_simple_molecule POSITIVE ACE2_cytoplasm
-ACE2_gene POSITIVE ACE2_cytoplasm
-estradiol_simple_molecule_cytoplasm POSITIVE ACE2_cytoplasm
-Calcitriol_simple_molecule_cytoplasm POSITIVE ACE2_cytoplasm
-alamandine_simple_molecule POSITIVE ACE2_cytoplasm
-ACE2_cytoplasm POSITIVE ACE2_cytoplasm
-androgen_simple_molecule POSITIVE TMPRSS2
-AGTR1_cytoplasm NEGATIVE MAS1:AGTR1_complex
-angiotensin 1-12_simple_molecule POSITIVE angiotensin I_simple_molecule
-ACE_cytoplasm POSITIVE angiotensin I_simple_molecule
-CTSD POSITIVE angiotensin I_simple_molecule
-CTSG POSITIVE angiotensin I_simple_molecule
-angiotensin 1-9_simple_molecule POSITIVE angiotensin I_simple_molecule
-angiotensin 1-7_simple_molecule POSITIVE angiotensin I_simple_molecule
-angiotensin 1-7_simple_molecule POSITIVE angiotensin 1-12_simple_molecule
-angiotensin 1-4_simple_molecule POSITIVE angiotensin 1-12_simple_molecule
-estradiol_simple_molecule_cytoplasm POSITIVE ACE_cytoplasm
-Calcitriol_simple_molecule_cell NEGATIVE ACE_cytoplasm
-ACE_cytoplasm POSITIVE ACE_cytoplasm
-angiotensin 1-7_simple_molecule POSITIVE angiotensin 1-9_simple_molecule
-AGTR2_cytoplasm POSITIVE angiotensin 1-9_simple_molecule
-ACE_cytoplasm POSITIVE angiotensin 1-7_simple_molecule
-MME_cytoplasm POSITIVE angiotensin 1-7_simple_molecule
-PRCP POSITIVE angiotensin 1-7_simple_molecule
-THOP1 POSITIVE angiotensin 1-7_simple_molecule
-PREP POSITIVE angiotensin 1-7_simple_molecule
-AGTR2_cytoplasm POSITIVE angiotensin 1-7_simple_molecule
-MAS1_cytoplasm POSITIVE angiotensin 1-7_simple_molecule
-angiotensin 1-5_simple_molecule POSITIVE angiotensin 1-7_simple_molecule
-alamandine_simple_molecule POSITIVE angiotensin 1-7_simple_molecule
-MRGPRD_cytoplasm POSITIVE angiotensin 1-7_simple_molecule
-AGTR1_cytoplasm NEGATIVE angiotensin 1-7_simple_molecule
-angiotensin 3-7_simple_molecule POSITIVE angiotensin 1-7_simple_molecule
-angiotensin 1-5_simple_molecule POSITIVE ACE_cytoplasm
-ACE_cytoplasm POSITIVE ACE_cytoplasm
-aldosterone_simple_molecule POSITIVE ACE_cytoplasm
-angiotensin 1-4_simple_molecule POSITIVE MME_cytoplasm
-MME_cytoplasm POSITIVE MME_cytoplasm
-AGTR2_cytoplasm POSITIVE AGTR2_cytoplasm
-angiotensin A_simple_molecule POSITIVE AGTR2_cytoplasm
-alamandine_simple_molecule POSITIVE angiotensin A_simple_molecule
-AGTR1_cytoplasm POSITIVE angiotensin A_simple_molecule
-MAS1_cytoplasm POSITIVE MAS1_cytoplasm
-angiotensin 1-5_simple_molecule POSITIVE MAS1_cytoplasm
-aldosterone_simple_molecule NEGATIVE MAS1_cytoplasm
-REN NEGATIVE Calcitriol_simple_molecule_cell
-MRGPRD_cytoplasm POSITIVE alamandine_simple_molecule
-MRGPRD_cytoplasm POSITIVE MRGPRD_cytoplasm
-ENPEP_cytoplasm POSITIVE angiotensin III_simple_molecule
-angiotensin IV_simple_molecule POSITIVE angiotensin III_simple_molecule
-ENPEP_cytoplasm POSITIVE ENPEP_cytoplasm
-ANPEP  POSITIVE angiotensin IV_simple_molecule
-AGTR1_cytoplasm POSITIVE angiotensin IV_simple_molecule
-LNPEP_cytoplasm POSITIVE angiotensin IV_simple_molecule
-angiotensin 3-7_simple_molecule POSITIVE angiotensin IV_simple_molecule
-AGTR1_cytoplasm POSITIVE aldosterone_simple_molecule
-LNPEP_cytoplasm POSITIVE LNPEP_cytoplasm
-angiotensin 3-7_simple_molecule POSITIVE LNPEP_cytoplasm

Executable Modules/SBML_Qual_build/sif/Virus_replication_cycle_stable.sbml.sif

-ACE2_EPITHELIAL CELL POSITIVE ACE2:SPIKE complex_complex_EPITHELIAL CELL
-Nucleocapsid_complex_SARS-CoV-2 POSITIVE ACE2:SPIKE complex_complex_EPITHELIAL CELL
-S_SARS-CoV-2 POSITIVE ACE2:SPIKE complex_complex_EPITHELIAL CELL
-S2_EPITHELIAL CELL POSITIVE ACE2:SPIKE complex_complex_EPITHELIAL CELL
-S2_EPITHELIAL CELL POSITIVE Nucleocapsid_complex_EPITHELIAL CELL
-S2_SARS-CoV-2 POSITIVE Nucleocapsid_complex_EPITHELIAL CELL
-(+)ss gRNA_rna_EPITHELIAL CELL POSITIVE Nucleocapsid_complex_EPITHELIAL CELL
-S2_EPITHELIAL CELL POSITIVE S2_EPITHELIAL CELL
-S2_SARS-CoV-2 POSITIVE S2_SARS-CoV-2
-N_EPITHELIAL CELL POSITIVE Replication transcription complex:N oligomer_complex
-Replication transcription complex_complex POSITIVE Replication transcription complex:N oligomer_complex
-Nucleocapsid_complex_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Replication transcription complex:N oligomer_complex
-N_EPITHELIAL CELL POSITIVE N_EPITHELIAL CELL
-Nsp10_EPITHELIAL CELL POSITIVE Replication transcription complex_complex
-Orf7b (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE Replication transcription complex_complex
-ds gRNA_rna POSITIVE Replication transcription complex_complex
-M ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-E ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-S ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-Orf7a ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-Orf6 ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-Orf3a ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-Orf8 ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-Orf9b ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-Orf14 ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-Orf7b ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-N ds sgmRNA_rna POSITIVE Replication transcription complex_complex
-(-)ss gRNA_rna_EPITHELIAL CELL POSITIVE Replication transcription complex_complex
-Nucleocapsid_complex_SARS-CoV-2 POSITIVE Nucleocapsid_complex_SARS-CoV-2
-Nucleocapsid_complex_SARS-CoV-2 POSITIVE Nucleocapsid_complex_SARS-CoV-2
-Nucleocapsid_complex_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Nucleocapsid_complex_SARS-CoV-2
-Endoplasmic reticulum_complex POSITIVE Double-membrane vesicle_complex
-Nsp4 POSITIVE Double-membrane vesicle_complex
-Nsp3 POSITIVE Double-membrane vesicle_complex
-Nsp6_Endoplasmic reticulum POSITIVE Double-membrane vesicle_complex
-Nsp6_Endoplasmic reticulum POSITIVE Double-membrane vesicle_complex
-Nsp3-4_glycosylated_Endoplasmic reticulum POSITIVE Nsp4
-Nsp3-4_glycosylated_Endoplasmic reticulum POSITIVE Nsp3
-pp1a Nsp6-11 POSITIVE Nsp6_Endoplasmic reticulum
-Nsp5_EPITHELIAL CELL POSITIVE Nsp6_Endoplasmic reticulum
-FURIN POSITIVE S2_EPITHELIAL CELL
-TMPRSS2 POSITIVE S2_EPITHELIAL CELL
-pp1a POSITIVE (+)ss gRNA_rna_EPITHELIAL CELL
-pp1ab POSITIVE (+)ss gRNA_rna_EPITHELIAL CELL
-(-)ss gRNA_rna_EPITHELIAL CELL POSITIVE (+)ss gRNA_rna_EPITHELIAL CELL
-N (+)ss sgmRNA_rna POSITIVE N_EPITHELIAL CELL
-Host translation complex_complex_EPITHELIAL CELL POSITIVE N_EPITHELIAL CELL
-M (+)ss sgmRNA_rna POSITIVE M_ROUGH ENDOPLASMIC RETICULUM
-Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM POSITIVE M_ROUGH ENDOPLASMIC RETICULUM
-M_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE M_ROUGH ENDOPLASMIC RETICULUM
-E_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-S_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-Orf3a_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-Orf6_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-Orf7a_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-Orf7b_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-Orf14_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-Orf9b_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-Orf8_ROUGH ENDOPLASMIC RETICULUM POSITIVE Host translation complex_complex_ROUGH ENDOPLASMIC RETICULUM
-E (+)ss sgmRNA_rna POSITIVE E_ROUGH ENDOPLASMIC RETICULUM
-E_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE E_ROUGH ENDOPLASMIC RETICULUM
-S (+)ss sgmRNA_rna POSITIVE S_ROUGH ENDOPLASMIC RETICULUM
-S_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE S_ROUGH ENDOPLASMIC RETICULUM
-Host translation complex_complex_EPITHELIAL CELL POSITIVE pp1a
-pp1a Nsp3-11_Endoplasmic reticulum POSITIVE pp1a
-pp1ab POSITIVE Host translation complex_complex_EPITHELIAL CELL
-pp1ab Nsp3-16_Endoplasmic reticulum POSITIVE pp1ab
-M_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE M_SARS-CoV-2
-E_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE E_SARS-CoV-2
-S_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE S_SARS-CoV-2
-Orf3a (+)ss sgmRNA_rna POSITIVE Orf3a_ROUGH ENDOPLASMIC RETICULUM
-Orf3a_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Orf3a_ROUGH ENDOPLASMIC RETICULUM
-Orf6  (+)ss sgmRNA_rna POSITIVE Orf6_ROUGH ENDOPLASMIC RETICULUM
-Orf6_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Orf6_ROUGH ENDOPLASMIC RETICULUM
-Orf7a (+)ss sgmRNA_rna POSITIVE Orf7a_ROUGH ENDOPLASMIC RETICULUM
-Orf7a_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Orf7a_ROUGH ENDOPLASMIC RETICULUM
-Orf7b (+)ss sgmRNA_rna POSITIVE Orf7b_ROUGH ENDOPLASMIC RETICULUM
-Orf7b_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Orf7b_ROUGH ENDOPLASMIC RETICULUM
-Orf14 (+)ss sgmRNA_rna POSITIVE Orf14_ROUGH ENDOPLASMIC RETICULUM
-Orf14_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Orf14_ROUGH ENDOPLASMIC RETICULUM
-Orf9b (+)ss sgmRNA_rna POSITIVE Orf9b_ROUGH ENDOPLASMIC RETICULUM
-Orf9b_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Orf9b_ROUGH ENDOPLASMIC RETICULUM
-Orf8 (+)ss sgmRNA_rna POSITIVE Orf8_ROUGH ENDOPLASMIC RETICULUM
-Orf8_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Orf8_ROUGH ENDOPLASMIC RETICULUM
-Orf7a_ER-GOLGI INTERMEDIATE COMPLEX POSITIVE Orf7a_SARS-CoV-2
-ACE2:SPIKE complex_complex_SARS-CoV-2 POSITIVE S2_SARS-CoV-2
-CTSB POSITIVE S2_SARS-CoV-2
-CTSL POSITIVE S2_SARS-CoV-2
-pp1ab nsp6-16 POSITIVE Nsp13
-Nsp5_EPITHELIAL CELL POSITIVE Nsp13
-pp1ab Nsp3-16_Endoplasmic reticulum POSITIVE pp1ab nsp6-16
-pp1a Nsp3-11_Endoplasmic reticulum POSITIVE pp1a Nsp3-11_Endoplasmic reticulum
-pp1ab Nsp3-16_Endoplasmic reticulum POSITIVE pp1ab Nsp3-16_Endoplasmic reticulum
-pp1a Nsp3-11_Endoplasmic reticulum POSITIVE pp1a Nsp6-11
-Nsp1_EPITHELIAL CELL POSITIVE Host translation_phenotype_EPITHELIAL CELL
-Nsp15 POSITIVE cellular response to exogenous dsRNA_phenotype
-M ds sgmRNA_rna POSITIVE M (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-M (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE M ds sgmRNA_rna
-E ds sgmRNA_rna POSITIVE E (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-E (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE E ds sgmRNA_rna
-S ds sgmRNA_rna POSITIVE S (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-S (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE S ds sgmRNA_rna
-Orf7a ds sgmRNA_rna POSITIVE Orf7a (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-Orf7a (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE Orf7a ds sgmRNA_rna
-Orf6 ds sgmRNA_rna POSITIVE Orf6 (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-Orf6 (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE Orf6 ds sgmRNA_rna
-Orf3a ds sgmRNA_rna POSITIVE Orf3a (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-Orf3a (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE Orf3a ds sgmRNA_rna
-Orf8 ds sgmRNA_rna POSITIVE Orf8 (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-Orf8 (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE Orf8 ds sgmRNA_rna
-Orf9b ds sgmRNA_rna POSITIVE Orf9b (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-Orf9b (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE Orf9b ds sgmRNA_rna
-Orf14 ds sgmRNA_rna POSITIVE Orf14 (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-Orf14 (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE Orf14 ds sgmRNA_rna
-Orf7b ds sgmRNA_rna POSITIVE Orf7b (-)ss sgmRNA_rna_DOUBLE-MEMBRANE VESICLE
-Orf7b (-)ss sgmRNA_rna_EPITHELIAL CELL POSITIVE Orf7b ds sgmRNA_rna
-ds gRNA_rna POSITIVE (-)ss gRNA_rna_DOUBLE-MEMBRANE VESICLE
-(-)ss gRNA_rna_EPITHELIAL CELL POSITIVE ds gRNA_rna
-(-)ss gRNA_rna_EPITHELIAL CELL POSITIVE Orf7b (-)ss sgmRNA_rna_EPITHELIAL CELL
-N  (-)ss sgmRNA_rna POSITIVE N ds sgmRNA_rna
-N (-)ss sgmRNA_rna POSITIVE N ds sgmRNA_rna
-Nsp1_EPITHELIAL CELL POSITIVE Host translation_phenotype_EPITHELIAL CELL