Integration updates

Integration/MINERVA_build/combine_sources.R

@@ -96,7 +96,7 @@ construct_overview <- function(elements) {
 ### Resource: url to the xml content of the diagram
 ### Type: what kind of file do we integrate
 ### Name: under which name the diaram is to be shown in the build
-res <- read.csv(url("https://git-r3lab.uni.lu/covid/models/raw/master/Integration/resources.csv"),
+res <- read.csv(url("https://git-r3lab.uni.lu/covid/models/raw/master/Integration/MINERVA_build/resources.csv"),
                 header = T, stringsAsFactors = F)
 ### Filter only these to be included
 res <- res[res$Include == "Yes",]

Integration/MINERVA_build/resources.csv

@@ -19,7 +19,7 @@ Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/Interferon%20pat
 Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/JNK%20pathway/JNK_pathway.xml,CellDesigner_SBML,JNK pathway
 Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/RTC-and-transcription/RTC-and-transcription-CD.xml,CellDesigner_SBML,RTC and transcription
 Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/E/E_SARS_CoV_2_22_05_2020.xml,CellDesigner_SBML,E protein interactions
-Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp4_Nsp6/Nsp4_Nsp6_v2.xml,CellDesigner_SBML,Nsp4 and Nsp6 interactions
+Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp4_Nsp6/Nsp4_Nsp6_v3.xml,CellDesigner_SBML,Nsp4 and Nsp6 interactions
 Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp9/Nsp9.xml,CellDesigner_SBML,Nsp9 interactions
 Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Nsp14/Nsp14.xml,CellDesigner_SBML,Nsp14 and metabolism
 Yes,https://git-r3lab.uni.lu/covid/models/-/raw/master/Curation/SARS-CoV-2%20proteins/Orf3a/Orf3a.xml,CellDesigner_SBML,Orf3a interactions