Commits · fdp · David Hoksza / talent · GitLab

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Nov 13, 2019
- try to utf encode · 0256b900
  David Hoksza authored 5 years ago
  
  0256b900
Nov 11, 2019
- Merge branch 'master' into fdp · b798b8fa
  David Hoksza authored 5 years ago
  
  b798b8fa
- fix problem when instead of changing direction the direction was subtracted · 0559ef25
  David Hoksza authored 5 years ago
  
  0559ef25
Nov 08, 2019
- fdp as a beautification op · 81d00177
  David Hoksza authored 5 years ago
  
  81d00177
Nov 06, 2019
- evaluation of energy in progress · 1fe15427
  David Hoksza authored 5 years ago
  
  1fe15427
- reaction inflation including species sharing position · 485ba719
  David Hoksza authored 5 years ago
  
  485ba719
- Merge branch 'master' into edge_routing · 001ff0d8
  David Hoksza authored 5 years ago
  
  001ff0d8
- removed some logging and comments · 691bd4c2
  David Hoksza authored 5 years ago
  
  691bd4c2
Nov 05, 2019
- fix problem with deduplication of species in multi-compartment reactions · e41784d4
  David Hoksza authored 5 years ago
  
  e41784d4
- optimized sweep line · d3fd937d
  David Hoksza authored 5 years ago
  
  d3fd937d
Nov 04, 2019
- basic line sweep implemneted · d0d866ce
  David Hoksza authored 5 years ago
  
  d0d866ce
- gui config · ae01ceec
  David Hoksza authored 5 years ago
  
  ae01ceec
Oct 31, 2019
- placing main reactants and products into the center when laying out ods on... · f4e34cde
  David Hoksza authored 5 years ago
  
  placing main reactants and products into the center when laying out ods on line in inserted reactions
  f4e34cde
- spacing settings for positioning new species is now 2D · 7a0c3615
  David Hoksza authored 5 years ago
  
  7a0c3615
- ODS layout deterministic; fixed direction test when positioning on line · 556cbbff
  David Hoksza authored 5 years ago
  
  556cbbff
- when laying connecting species on a line consider their position to the closest copied species · 0bcff139
  David Hoksza authored 5 years ago
  
  0bcff139
Oct 30, 2019
- different treatment of main reactants and products due to splitting to compartments · 6c4df3aa
  David Hoksza authored 5 years ago
  
  6c4df3aa
- updated command line parameters; correct naming of output file; updated mrm scripts · b4ed18af
  David Hoksza authored 5 years ago
  
  b4ed18af
- remove empty space between compartments · 4d943712
  David Hoksza authored 5 years ago
  
  4d943712
Oct 29, 2019
- handling compoartments overlaps · 9b171f07
  David Hoksza authored 5 years ago
  
  9b171f07
- handling compoartments overlaps · 264565e2
  David Hoksza authored 5 years ago
  
  264565e2
Oct 28, 2019
- initial layout of compartments · b7f58b9b
  David Hoksza authored 5 years ago
  
  b7f58b9b
Oct 25, 2019
- compartments initial mutual position; merging in progress · 077f8aad
  David Hoksza authored 5 years ago
  
  077f8aad
Oct 23, 2019
- merged master · 60e7ea7d
  David Hoksza authored 5 years ago
  
  60e7ea7d
- explicitely encoding post requests into UTF-8 · 2f97346c
  David Hoksza authored 5 years ago
  
  2f97346c
- do not split by compartment by default · 3c9ab669
  David Hoksza authored 5 years ago
  
  3c9ab669
- ability to process non-multi sbmls; sanitization of names · 9e6443a1
  David Hoksza authored 5 years ago
  
  9e6443a1
- implemented creation of connected components graph · cae47e87
  David Hoksza authored 5 years ago
  
  cae47e87
Oct 22, 2019
- allow creating incomplete reactions when extracting compartments · ac4ea733
  David Hoksza authored 5 years ago
  
  ac4ea733
- fix issue with fixing ODS intersecection in situations when we have a species in multiple roles · e528bab4
  David Hoksza authored 5 years ago
  
  e528bab4
- fix issue with fixing ODS intersecection in situations when we have a species in multiple roles · 23c1b678
  David Hoksza authored 5 years ago
  
  23c1b678
- map transfer store split to map_transfer and store · c6bbb7fe
  David Hoksza authored 5 years ago
  
  c6bbb7fe
- improved handling of species modifications · a2b5e314
  David Hoksza authored 5 years ago
  
  a2b5e314
Oct 21, 2019
- using template reaction positions when laying out not mapped connecting species · 3ced45b6
  David Hoksza authored 5 years ago
  
  3ced45b6
- fix swapped direction vectors in l_not_mapped_connecting_species; fix... · 3a790fb3
  David Hoksza authored 5 years ago
  
  fix swapped direction vectors in l_not_mapped_connecting_species; fix retrieving multiple same species in closest neighbors function
  3a790fb3
- report html pages · 0a1539c6
  David Hoksza authored 5 years ago
  
  0a1539c6
- handling specifically situation with two reactions connected with two identical species · e6f44d40
  David Hoksza authored 5 years ago
  
  e6f44d40
Oct 18, 2019
- fix issue when using tgt ods instead of tmp ods when laying out inserted connecting species · 2fa7aa71
  David Hoksza authored 5 years ago
  
  2fa7aa71
- fix and simplify laying out inserting new connecting species using roles scores · abba282c
  David Hoksza authored 5 years ago
  
  abba282c
Oct 17, 2019
- reusing ods for connecting species · e449d52f
  David Hoksza authored 5 years ago
  
  e449d52f