Commits · 60725b05f4acf2f2897a34d0721a0b658c91a1a5 · Environmental Cheminformatics / RMassBank_by_MaliRemorker

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Mar 27, 2014
- Update RMassBankXCMS.Rnw · 60725b05
  schymane authored 11 years ago
  
  Fixed minor errors, reordered 3.3 and 3.4 to avoid confusion, mentioned msmsRead.
  60725b05
- Merge remote-tracking branch 'origin/HEAD' · 3ad15f07
  michele authored 11 years ago
  
  3ad15f07
- Fix electronic noise removal in workflow · 9d5b7969
  michele authored 11 years ago
  
  9d5b7969
- Merge pull request #68 from sneumann/master · d58b5b15
  meowcat authored 11 years ago
  
  Please pull these fixes, which enable peak list input, and bump version to 1.5.2
  d58b5b15
Mar 26, 2014
- Enable the manual peaklist input example in the vignette, closes #67 · 9c3d30b2
  Steffen Neumann authored 11 years ago
  
  9c3d30b2
Mar 24, 2014
- Merge branch 'bioc2014' of https://github.com/ermueller/RMassBank · 9ab4abf7
  Steffen Neumann authored 11 years ago
  
  9ab4abf7
- Fixed the peaklist-workflow in msmsWorkflow · b758b736
  ermueller authored 11 years ago
  
  b758b736
Mar 11, 2014
- some re-indenting and line breaks, no code changes · 06a6dce4
  Steffen Neumann authored 11 years ago
  
  06a6dce4
- Merge pull request #66 from sneumann/master · e26d3f50
  meowcat authored 11 years ago
  
  Please pull our changes
  e26d3f50
- Eriks commit fixes the vignette. Closes #62 · 8e845edd
  Steffen Neumann authored 11 years ago
  
  8e845edd
Mar 10, 2014
- Merge branch 'bioc2014' of https://github.com/ermueller/RMassBank · e9de3bd5
  Steffen Neumann authored 11 years ago
  
  e9de3bd5
- XCMS vignette adjusted and fixed a small error in msmsRead(childscans) · 67de26c2
  ermueller authored 11 years ago
  
  67de26c2
Mar 07, 2014
- Merge branch 'bioc2014' of https://github.com/ermueller/RMassBank · 9dd755b7
  Steffen Neumann authored 11 years ago
  
  9dd755b7
- Refactoring and adjusting msmsRead, concatenation function for specs is now available, too · a9260d43
  ermueller authored 11 years ago
  
  a9260d43
Feb 18, 2014
- Re-added XCMS vignette. · cb61439a
  Steffen Neumann authored 11 years ago
  
  cb61439a
- Version bump. Next BioC push will be 1.5.1 · 30798ed7
  Steffen Neumann authored 11 years ago
  
  30798ed7
- Merge pull request #61 from sneumann/master · 8b242d40
  meowcat authored 11 years ago
  
  Please pull improved show() method and roxygen generated manpages
  8b242d40
- Add roxygen-generated manpages · 9d855498
  Steffen Neumann authored 11 years ago
  
  9d855498
- Polish wording in show method · e66e596f
  Steffen Neumann authored 11 years ago
  
  e66e596f
Feb 17, 2014
- Differences in peak numbers now show up in showmethod · f464ca04
  ermueller authored 11 years ago
  
  f464ca04
Feb 11, 2014
- Merge pull request #60 from sneumann/master · 7f3f36c9
  meowcat authored 11 years ago
  
  Please pull our changes
  7f3f36c9
- fix to more missing renamings of childHeader[s] · d28649e2
  Steffen Neumann authored 11 years ago
  
  d28649e2
Feb 10, 2014
- Some small fixes have been done · 9fdf1fdf
  ermueller authored 11 years ago
  
  9fdf1fdf
Feb 06, 2014
- Updated manpages with roxygen · a2cbf4ac
  Steffen Neumann authored 11 years ago
  
  a2cbf4ac
- remove usage: sections from roxygen documentation, which get added... · a59c7f8a
  Steffen Neumann authored 11 years ago
  
  remove usage: sections from roxygen documentation, which get added automatically from the code sections
  a59c7f8a
- remove usage: section from roxygen, that gets added by roxygen automatically,... · 0b5e2e46
  Steffen Neumann authored 11 years ago
  
  remove usage: section from roxygen, that gets added by roxygen automatically, avoids code/manpage mismatches
  0b5e2e46
- exclude createSpecsFromPeaklists which has no documentation yet · 7155948c
  Steffen Neumann authored 11 years ago
  
  7155948c
- So, we moved *everything* into Imports:, and added Rcpp as Depends: to avoid that nasty · 0c5282a4
  Steffen Neumann authored 11 years ago
  
  warning `class "C++Object" is defined (with package slot ‘Rcpp’) but no metadata object found to revise subclass information`. Closes #4.
  0c5282a4
- disable example, there are currently issues in rpubchem, as discussed in issue #8 · 2e84d685
  Steffen Neumann authored 11 years ago
  
  2e84d685
- remove debugging output · 2e2d2d6a
  Steffen Neumann authored 11 years ago
  
  2e2d2d6a
- RMassBank xcms can now create multiple ids for a single file without loading it multiple times · 1e09b072
  ermueller authored 11 years ago
  
  1e09b072
Feb 05, 2014
- Fixed documentation errors(Couldn't use Roxygen, though) · ca3bae84
  ermueller authored 11 years ago
  
  ca3bae84
Jan 27, 2014
- fixed merge mistake · d045e24d
  michele authored 11 years ago
  
  d045e24d
- Merge branch 'april2013hackfest' into master · 7f8e736f
  michele authored 11 years ago
  
  7f8e736f
- updated from SVN · 7c81fc43
  michele authored 11 years ago
  
  7c81fc43
- merge · 919617ff
  michele authored 11 years ago
  
  919617ff
Jan 14, 2014
- Added the check for files existing · 1863325a
  ermueller authored 11 years ago
  
  1863325a
- Added peaklist and plot functionality · f93422fd
  ermueller authored 11 years ago
  
  f93422fd
- Added peaklist and plot functionality · 675d9e3b
  ermueller authored 11 years ago
  
  675d9e3b
Jan 09, 2014

Fixed DESCRIPTION, moved "script" part out of msmsRead.R, introduced detection... · b332e716

michele authored 11 years ago

Fixed DESCRIPTION, moved "script" part out of msmsRead.R, introduced detection of wrong spectraList in analyzeMsMs, added functions to update outdated settings files (while issuing warnings).

b332e716