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Environmental Cheminformatics
RMassBank_by_MaliRemorker
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9c3d30b251405e7f267621f5309e2f5843085227
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Branches
14
UFZ
default
protected
april2013hackfest
bioc
bioc2014
branch_treutler
devel
feature/defaultCC0
master
par_reads
refactoring
s4power
sneumann-patch-1
sneumann-patch-2
treutler-merge
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Aug
revert enabling unit tests for now
enable unit tests, add another for for empty generated.formula(), closes #199, add NEWS, bump version
Fixed bug and implemented restarts of web queries for more error tolerance
Added adducts
http://cts.fiehnlab.ucdavis.edu/service/compound/ -> https://cts.fiehnlab.ucdavis.edu/service/compound/
bump x.y.z versions to odd y after creation of RELEASE_3_8 branch
bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch
Fix for RCurl failure, as suggested by @tsufz
Version bump
Merge remote-tracking branch 'origin/master'
Bugfix for some PRM data with precursor scan 0
Fixed remaining fiehnlab URLs to https
Merge pull request #210 from MassBank/sneumann-patch-2
Merge pull request #205 from tsufz/master
Move base URL of CTS from http to https
sneumann-patch-…
sneumann-patch-2 upstream/sneumann-patch-2
Changed order of AC: IONIZATION and AC: ION_MODE as the record specification demands it
Corrected the position of SP in records
Added further adducts
Added Li to DBE calculation
Refined the calculation of monoisotopic masses additions using enviPat
Fixed the parsing of msp files with decimal delimiter comma instead of point
Fixed bug in the record compilation in case of empty spectra
Added additional adducts
Change order of ION_MODE and IONIZATION to be compliant with specification. Fixes issue #204.
Add .gitignore
Fixed bug in the stored adduct information
Stored adduct information in data.frame instead of if-clauses
Correction for the accessibility of isotope information
Added K to the elements of the dbe calculation
Added a check whether the elements in the molecular formulas are covered in the dbe calculation to convert strange error to explicit error
Fixed bug for the export of invalid records
Passed the molecular formula to the the unified adduct recognition
Distributed the unified adduct recognition check to all remaining relevant places
Added enviPat to the dependencies and fixed bug in the unified adduct recognition check
Distributed the unified adduct recognition check to all relevant places
Fixed bug in the unified adduct recognition check
Updated the adduct recognition check in a unified way
Added 11 additional adducts: [M+K]+, [M+ACN+H]+, [M+ACN+Na]+, [M+2Na-H]+, [2M+H]+, [2M+K]+, [2M+Na]+, [2M+NH4]+, [2M+ACN+H]+, [M+ACN+2H]2+, [M+2H]2+
Fixed bug: Corrected charge for adduct pNH4
Fixed bug for modes other than pH by passing the mode parameter to findMz
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