.aspell.en.pws

+personal_ws-1.1 en 0 utf-8
+Affero
+AGPL
+alice
+Alper
+Backend
+backend
+backends
+Biomedicine
+Christophe
+DAISY’s
+DAta
+Dataset
+dataset
+Dataset’s
+dataset’s
+datasets
+Datasets
+datatypes
+Ded
+DOI
+du
+GDPR
+GigaScience
+github
+giz
+Grouès
+howto
+Jacek
+Jarosz
+jekyll
+Kavita
+lcsb
+LCSB's
+LDAP
+Lebioda
+LuxPARK
+Menubar
+Pinar
+pre
+projects’s
+Rege
+Reinhard
+repo
+Sandrine
+Satagopam
+STDOUT
+Storages
+SYSCID
+SYstem
+TBC
+Trefois
+Université
+unlinked
+Venkata
+Vilem
+vip
+Yohan
+YYYY
+Quickstart

.gitlab-ci.yml

 # In case something goes horribly wrong, you can fall back to `image: ruby:latest`
-image: git-r3lab.uni.lu:4567/r3/docker/jekyll-lcsb:1.0
+image: git-r3lab.uni.lu:4567/r3/docker/jekyll-lcsb:1.5
 
-build the website:
+build:
   stage: build
   before_script:
   - gem install bundler -v2.0.2
-  - bundle install && bundle update
+  - bundle install && bundle update jekyll-theme-lcsb-default && bundle update jekyll-theme-lcsb-frozen-components
   script:
   - 'echo "baseurl: /$CI_PROJECT_NAME" >> _config_ci.yml'
   - 'echo "url: https://$CI_PROJECT_NAMESPACE.$CI_PAGES_DOMAIN" >> _config_ci.yml'
@@ -18,11 +18,24 @@ build the website:
   variables:
     JEKYLL_ENV: production
 
+
+test_spell_check:
+  image: debian
+  stage: test
+  dependencies:
+     - build
+  script:
+  - apt-get update
+  - apt-get install -y aspell aspell-en
+  - ./test_spell_check.sh
+  except:
+  - master
+
+
 pages:
   stage: deploy
   only:
   - master
-  - develop
   script:
   - mv test public
   - echo "Your website is available at $CI_PAGES_URL"

Gemfile

@@ -21,8 +21,7 @@ gem 'jekyll-theme-lcsb-default', '~> 0.3'
 # If you have any plugins, put them here!
 group :jekyll_plugins do
  gem "jekyll-paginate-v2", 
-     "~> 2",
-     :git => "https://github.com/sverrirs/jekyll-paginate-v2.git"
+     "~> 3"
 
  gem "jekyll-feed", 
      "~> 0.6"

Gemfile.lock

 GIT
-  remote: https://github.com/sverrirs/jekyll-paginate-v2.git
-  revision: f8664cf68b59de823b88d4e6b1b985457f2c13af
+  remote: https://git-r3lab.uni.lu/core-services/jekyll-theme-lcsb-frozen-components.git
+  revision: 068c2c0edc8ae3b462008bfd9882fa2c36909c2b
+  branch: master
   specs:
-    jekyll-paginate-v2 (2.1.0)
-      jekyll (>= 3.0, < 5.0)
+    jekyll-theme-lcsb-frozen-components (0.0.2)
+      jekyll (> 3.0)
 
 GEM
   remote: https://rubygems.org/
@@ -11,15 +12,15 @@ GEM
     addressable (2.7.0)
       public_suffix (>= 2.0.2, < 5.0)
     colorator (1.1.0)
-    concurrent-ruby (1.1.5)
+    concurrent-ruby (1.1.6)
     em-websocket (0.5.1)
       eventmachine (>= 0.12.9)
       http_parser.rb (~> 0.6.0)
-    eventmachine (1.2.7-x64-mingw32)
-    ffi (1.11.2-x64-mingw32)
+    eventmachine (1.2.7)
+    ffi (1.12.2)
     forwardable-extended (2.6.0)
     http_parser.rb (0.6.0)
-    i18n (1.7.0)
+    i18n (1.8.2)
       concurrent-ruby (~> 1.0)
     jekyll (4.0.0)
       addressable (~> 2.4)
@@ -38,11 +39,13 @@ GEM
       terminal-table (~> 1.8)
     jekyll-feed (0.13.0)
       jekyll (>= 3.7, < 5.0)
-    jekyll-sass-converter (2.0.1)
+    jekyll-paginate-v2 (3.0.0)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-sass-converter (2.1.0)
       sassc (> 2.0.1, < 3.0)
     jekyll-seo-tag (2.6.1)
       jekyll (>= 3.3, < 5.0)
-    jekyll-theme-lcsb-default (0.3.0)
+    jekyll-theme-lcsb-default (0.3.17)
       jekyll (~> 4.0)
       jekyll-seo-tag (~> 2.5)
     jekyll-watch (2.2.1)
@@ -51,7 +54,7 @@ GEM
     kramdown-parser-gfm (1.1.0)
       kramdown (~> 2.0)
     liquid (4.0.3)
-    listen (3.2.0)
+    listen (3.2.1)
       rb-fsevent (~> 0.10, >= 0.10.3)
       rb-inotify (~> 0.9, >= 0.9.10)
     mercenary (0.3.6)
@@ -61,35 +64,30 @@ GEM
       jekyll-seo-tag (~> 2.1)
     pathutil (0.16.2)
       forwardable-extended (~> 2.6)
-    public_suffix (4.0.1)
+    public_suffix (4.0.4)
     rb-fsevent (0.10.3)
-    rb-inotify (0.10.0)
+    rb-inotify (0.10.1)
       ffi (~> 1.0)
-    rouge (3.13.0)
+    rouge (3.17.0)
     safe_yaml (1.0.5)
-    sassc (2.2.1-x64-mingw32)
+    sassc (2.2.1)
       ffi (~> 1.9)
     terminal-table (1.8.0)
       unicode-display_width (~> 1.1, >= 1.1.1)
-    tzinfo (2.0.0)
-      concurrent-ruby (~> 1.0)
-    tzinfo-data (1.2019.3)
-      tzinfo (>= 1.0.0)
-    unicode-display_width (1.6.0)
-    wdm (0.1.1)
+    unicode-display_width (1.7.0)
 
 PLATFORMS
-  x64-mingw32
+  ruby
 
 DEPENDENCIES
   bundler (> 2.0)
   jekyll (~> 4.0)
   jekyll-feed (~> 0.6)
-  jekyll-paginate-v2 (~> 2)!
+  jekyll-paginate-v2 (~> 3)
   jekyll-theme-lcsb-default (~> 0.3)
+  jekyll-theme-lcsb-frozen-components (~> 0.0.1)!
   minima (~> 2.5)
   tzinfo-data
-  wdm (~> 0.1.1)
 
 BUNDLED WITH
-   2.0.2
+   2.1.4

README.md

+# Daisy documentation
+
+## How to get started
+
+1. clone the repository
+
+2. install dependencies using bundler
+
+```bash
+bundle install --path vendor/bundle
+```
+
+1. run server locally
+
+```bash
+bundle exec jekyll server
+```
+

_config.yml

 # This config file is meant to be edited once, before the site is deployed.
-# After that, new edits are rarely needed. 
+# After that, new edits are rarely needed.
 
 # Usually, you need only to change `title`, `email`, `description`, `baseurl`, `url` and `date`.
 # To see complete guide, please take a look into `readme.md` file.
@@ -12,14 +12,14 @@
 # you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
 # You can create any custom variable you would like, and they will be accessible
 # in the templates via {{ site.myvariable }}.
-title: Blank template using LCSB theme.
-email: your-email@example.com
+title: DAta Information SYstem (DAISY)
+email: pinar.alper@uni.lu
 description: >- # this means to ignore newlines until "baseurl:"
-  Write an awesome description for your new site here. You can edit this
-  line in _config.yml. It will appear in your document head meta (for
-  Google search results) and in your feed.xml site description.
+  The user guide for the DAta Information SYstem (DAISY). It allows to manage your research data
+  in a GDPR-compliant manner and share the projects with your collaboration partners.
 
-# URL settings that will be used to access on your local machine 
+
+# URL settings that will be used to access on your local machine
 # Note #1: by default you will need to use port 4000 (https://localhost:4000/website) to access the website in your browser running on your machine with `bundle exec jekyll serve`
 # Note #2: the configuration used in GitlabCI is generated in `.gitlab-ci.yml` file automatically for you, if you need to change that - do it there
 baseurl: "/website"
@@ -39,17 +39,17 @@ linkedin_schoolname: university-of-luxembourg
 permalink: /:year/:month/:title.html
 
 # Pagination Settings
-pagination:
-  enabled: true
-  title: ':title - page :num of :max'
-  per_page: 7
-  permalink: '/page/:num/'
-  limit: 0
-  sort_field: 'date'
-  sort_reverse: true
-  trail:
-    before: 2
-    after: 2
+# pagination:
+#   enabled: true
+#   title: ':title - page :num of :max'
+#   per_page: 7
+#   permalink: '/page/:num/'
+#   limit: 0
+#   sort_field: 'date'
+#   sort_reverse: true
+#   trail:
+#     before: 2
+#     after: 2
 
 # Build settings (no need to touch these)
 markdown: kramdown

about.md

----
-layout: page
-title: About
-permalink: /about/
-order: 2
----
-
-Here you would normally put your contact information.
-
----
-
-You can find out more info about customizing your Jekyll theme, as well as basic Jekyll usage documentation at [jekyllrb.com](https://jekyllrb.com/)
-
-You can find the source code for this theme at Gitlab:
-[core-services/jekyll-theme-lcsb-default](https://git-r3lab.uni.lu/core-services/jekyll-theme-lcsb-default).
-
-We have successfully helped in publishing at least (their number is increasing) the following websites:
- * [Page of theme](https://core-services.pages.uni.lu/jekyll-theme-lcsb-default/)
- * [This very page](https://core-services.pages.uni.lu/pages-jekyll-lcsb-template/)
- * [Minerva doc's](https://minerva.pages.uni.lu/doc/)
- * [PDmap blog](https://pdmap.pages.uni.lu/blog/)
- * [IMP](https://imp.pages.uni.lu/web/)
\ No newline at end of file

auditors.md

+---
+layout: page
+title: Auditor guide
+permalink: /auditors/
+order: 3
+---
+
+# DAISY user guide for the auditors
+
+<br>
+**Under construction** &#128296;

contact.md

+---
+layout: page
+title: Contact us
+permalink: /contact/
+order: 4
+---
+
+# Contact and credits
+
+For more details or information about DAISY application, contact us:
+
+ - Primary contact: [Pinar Alper](mailto:pinar.alper@uni.lu)
+ - Primary contact: [Regina Becker](mailto:regina.becker@uni.lu)
+
+ - Developer: [Valentin Grouès](mailto:valentin.groues@uni.lu)
+ - Developer: [Jacek Lebioda](mailto:jacek.lebioda@uni.lu)
+ - Developer [Yohan Jarosz](mailto:yohan.jarosz@uni.lu)
+ - Developer [Kavita Rege ](mailto:kavita.rege@uni.lu)
+
+ - Contributor: [Vilem Ded](mailto:vilem.ded@uni.lu)
+ - Contributor: [Sandrine Munoz](mailto:sandrine.munoz@uni.lu)
+ - Contributor: [Christophe Trefois](mailto:christophe.trefois@uni.lu)
+ - Contributor: [Venkata Satagopam](mailto:venkata.satagopam@uni.lu)
+ - Contributor: [Reinhard Schneider](mailto:reinhard.schneider@uni.lu)
+
+<br>
+In case of problems with this website please contact [LCSB data stewards](mailto:lcsb-datastewards@uni.lu).

help.md

----
-layout: page
-title: Help
-permalink: /the-help/
-order: 3
----
-
-If you need help, don't hesitate to send us (`lcsb-sysadmins (at) uni.lu`) an email!
\ No newline at end of file