Explore projects

Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).

Scripts for the analysis of metagenomic data from the first week of life.

seesaw_code project, see details in:

Scripts for the analysis of metagenomic data from the first week of life.

Integrated meta-omics pipeline

LAO time series analyses

A project for interactions with PubChem

This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.

Fork from https://gitlab.com/pd2af/pd2af

A project for interactions with PubChem

Fork from https://gitlab.com/pd2af/pd2af

derived from the work done here https://github.com/snakemake-workflows/chipseq

Integrated meta-omics pipeline

Fork from imp3 repo to use for NOMIS etc.