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Scripts for the analysis of metagenomic data from the first week of life.

Scripts for the analysis of metagenomic data from the first week of life.

Integrated meta-omics pipeline

Integrated meta-omics pipeline

Fork from imp3 repo to use for NOMIS etc.

This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.

LAO time series analyses

Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).

Method testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs Data obtained by sequencing "generous donor B" across several runs Original data prepared by Rashi (post-sequencing) Initial analyses performed by CCL

Fork from https://gitlab.com/pd2af/pd2af

Fork from https://gitlab.com/pd2af/pd2af