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This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.

Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).

Scripts for the analysis of metagenomic data from the first week of life.

LAO time series analyses

Integrated meta-omics pipeline

Integrated meta-omics pipeline