Explore projects

Fork from imp3 repo to use for NOMIS etc.

Integrated meta-omics pipeline

seesaw_code project, see details in:

derived from the work done here https://github.com/snakemake-workflows/chipseq

Method testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs Data obtained by sequencing "generous donor B" across several runs Original data prepared by Rashi (post-sequencing) Initial analyses performed by CCL

A project for interactions with PubChem

Fork from https://gitlab.com/pd2af/pd2af

A project for interactions with PubChem

Fork from https://gitlab.com/pd2af/pd2af

Scripts for the analysis of metagenomic data from the first week of life.

This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.

Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).

Scripts for the analysis of metagenomic data from the first week of life.