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Computational models of different aspects of COVID-19

Integrated meta-omics pipeline

STAR and DESeq2

ELIXIR Luxembourg's GA4GH Beacon API implementation in Python

The back-end component of Fractalis.

Additional analyses for IMP manuscript

Scheduling assignments for Parkinson Research Clinic

Code used for the analysis of the RNA-seq, ATAC-seq and ChIP-seq datasets produced in this study. Original fastq files deposited in https://ega-archive.org/, under the accession number EGAD00001009288.

LAO time series analyses

Repository containing workflows for IMP3 downstream analyses Related project(s): NOMIS

Basic practice repository for git trainings

Repository for all slides related to R3 courses.

Network Analyses - SpiecEasi The Rscripts and Snakefile herein can be used to run SpiecEasi for generating networks from taxonomic counts Dependencies snakemake >= 5.3.0 References (SpiecEasi)[https://github.com/zdk123/SpiecEasi]

A project for interactions with PubChem

Anna Chen: Black Box Optimization

Method testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs Data obtained by sequencing "generous donor B" across several runs Original data prepared by Rashi (post-sequencing) Initial analyses performed by CCL

Classifier scripts to identify prokaryote and eukaryotic contigs