Integrated meta-omics pipeline
Additional analyses for IMP manuscript
LAO time series analyses
Repository for all slides related to R3 courses.
Scripts for the analysis of metagenomic data from the first week of life.
Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).
This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.
Analysis workflows for the Leptospirillum ferriphilum omics data
seesaw_code project, see details in:
R package for Gene Regulatory Networks
Integrated Network approach for Cellular Transitions through SIgnalling MOlecules