Skip to content
Snippets Groups Projects
Commit 3e19938a authored by Laurent Heirendt's avatar Laurent Heirendt :airplane:
Browse files

Merge branch '2021-04-20_IT101-DM' into 'develop'

2021-04-20_IT101-DM and 2021-06-08_IT101-DM

See merge request R3/school/courses!104
parents 0351ce6a 6a12f35f
No related branches found
No related tags found
No related merge requests found
Showing
with 184 additions and 0 deletions
../../2021-04-20_IT101-DM/slides/data-introduction.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/data_flow.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/fair-principles.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/howtos.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/img
\ No newline at end of file
# IT101 - Working with computers
<br>IT101 - Working with computers<br>
## June 8th, 2021
<div style="top: 6em; left: 0%; position: absolute;">
<img src="theme/img/lcsb_bg.png">
</div>
<div style="top: 5em; left: 60%; position: absolute;">
<img src="slides/img/r3-training-logo.png" height="200px">
<br><br><br><br>
<h3></h3>
<br><br><br>
<h4>
Vilem Ded<br>
Data Steward<br>
vilem.ded@uni.lu<br>
<i>Luxembourg Centre for Systems Biomedicine</i>
</h4>
</div>
../../2021-04-20_IT101-DM/slides/ingestion.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/introduction.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/list.json
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/overview.md
\ No newline at end of file
# Problem solving
A guide for solving computing issues
1. Express the problem
* Write down what you want to achieve
2. Search for help
* Read **FAQs**, **help pages** and the **official documentation** well before turning to Google
* Use stack exchange, forums and related resources (carefully)
3. Ask an expert
* Submit the problem in writing
* Make the question interesting
# Responsible and Reproducible Research (R<sup>3</sup>)
## What is R<sup>3</sup>?
A multi-facetted change management
process built on 3 pillars:
- R3 pathfinder
- R3 school
- R3 accelerator
Common link module: R3 clinic
<div style="top: -1em; left: 50%; position: absolute;">
<img src="slides/img/3pillars-full.png">
</div>
<br>
<br>
<aside class="notes">
Pathfinder - policies, finding optimal data management changes<br>
School - courses, howtos, trainnings<br>
Accelerator - advanced teams and their boost/support, CI/CD setup<br>
Clinic - hands-on, meetings in groups, code review + suggestions<br>
</aside>
## R<sup>3</sup> Training
* LCSB's Monthly Data Management and Data Protection training
* ELIXIR Luxembourg's trainings <br>
https://elixir-luxembourg.org/training
* Reproducible analysis workflows with Snakemake and Conda (2021-07-14)
* Best practices in research data management and stewardship (2021-06-14)
* R<sup>3</sup> school Git basics - every 4 months
<aside class="notes">
Direct newcommers to this monthly training
</aside>
# Responsible and Reproducible Research (R<sup>3</sup>)
<section data-transition="none" data-background-image="slides/img/r3-training-logo.png" data-background-size="1000px" data-background-opacity="0.1">
</section>
<div style="display:block;text-align:center;position:relative;" >
<div class="profile-container">
* Reinhard Schneider
* <img src="slides/img/R3_profile_pictures/reinhard_schneider.png">
* Head of Bioinformatics Core
</div>
<div class="profile-container">
* Pinar Alper
* <img src="slides/img/R3_profile_pictures/pinar_alper.png">
* Datasteward
</div>
<div class="profile-container">
* Yohan Yarosz</li>
* <img src="slides/img/R3_profile_pictures/yohan_yarosz.png">
* Development
</div>
<div class="profile-container">
* Laurent Heirendt</li>
* <img src="slides/img/R3_profile_pictures/laurent_heirendt.png">
* Git, CI
</div>
<div class="profile-container">
* Sarah Peter</li>
* <img src="slides/img/R3_profile_pictures/sarah_peter.png">
* Infrastructure
</div>
<div class="profile-container">
* Valentine Groues</li>
* <img src="slides/img/R3_profile_pictures/valentine_groues.png">
* Development
</div>
<div class="profile-container">
* Vilem Ded</li>
* <img src="slides/img/R3_profile_pictures/vilem_ded.png">
* Datasteward
</div>
<div class="profile-container">
* Noua Toukourou</li>
* <img src="slides/img/R3_profile_pictures/noua_toukourou.png">
* Infrastructure
</div>
<div class="profile-container">
* Alexey Kolodkin</li>
* <img src="slides/img/R3_profile_pictures/alexey_kolodkin.png">
* Datasteward
</div>
<div class="profile-container">
* Maharshi Vyas</li>
* <img src="slides/img/R3_profile_pictures/maharshi_vyas.png">
* Infrastructure
</div>
<div class="profile-container">
* Nene Barry</li>
* <img src="slides/img/R3_profile_pictures/nene_barry.png">
* Datasteward
</div>
<div class="profile-container">
* Karim Chaouch</li>
* <img src="slides/img/R3_profile_pictures/karim_chaouch.png">
* Development
</div>
<div class="profile-container">
* Christophe Trefois
* <img src="slides/img/R3_profile_pictures/christophe_trefois.png">
* R<sup>3</sup> team lead
</div>
</div>
../../2021-04-20_IT101-DM/slides/reproducibility.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/storage_setup.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/thanks.md
\ No newline at end of file
../../2021-04-20_IT101-DM/slides/visualization.md
\ No newline at end of file
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment