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  • Marek Ostaszewski
  • systems_biology_translators
  • Merge requests
  • Open 0
  • Merged 19
  • Closed 6
  • All 25
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  • updated conversion: handle non-graphical nodes and use recent header specification
    !25 · created Jan 19, 2023 by Marek Ostaszewski
    • MERGED
    • 0
    updated Jan 19, 2023
  • NaviCell note processing
    !24 · created Apr 29, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Apr 29, 2022
  • read/write formats harmonised
    !23 · created Apr 05, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Apr 05, 2022
  • remove nonprintables and improve read
    !22 · created Apr 04, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Apr 04, 2022
  • names in labels/tooltips
    !21 · created Apr 04, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Apr 04, 2022
  • Rename file, update errors when adding missing effectors, split into core/functions
    !20 · created Mar 18, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Mar 18, 2022
  • Indexing bug, now nodes rewired sequentially follwing while iterations
    !19 · created Feb 01, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Feb 01, 2022
  • create graph functions modified, small updates on casq run
    !18 · created Feb 01, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Feb 01, 2022
  • Update convert_from_sif.R
    !17 · created Jan 28, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Jan 28, 2022
  • update the converter
    !16 · created Jan 28, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Jan 28, 2022
  • reorganisation, convert_from_sif with a wrapper function
    !15 · created Jan 28, 2022 by Marek Ostaszewski
    • MERGED
    • 0
    updated Jan 28, 2022
  • convert_from_sif for production, working for the submaps. created...
    !14 · created Dec 06, 2021 by Devrim Gunyel
    • MERGED
    • 0
    updated Jan 28, 2022
  • working test with pdmap submaps application to hipathia
    !13 · created Nov 25, 2021 by Devrim Gunyel
    • CLOSED
    • 0
    updated Dec 06, 2021
  • test_apply_hipathia modified for submaps. Each submap is a seperate input
    !12 · created Nov 24, 2021 by Devrim Gunyel
    • CLOSED
    • 0
    updated Nov 25, 2021
  • cleaning, sif format, verbose output
    !11 · created Nov 24, 2021 by Marek Ostaszewski
    • MERGED
    • 0
    updated Nov 24, 2021
  • applying converted pdmap submaps to hipathia
    !10 · created Nov 24, 2021 by Devrim Gunyel
    • MERGED
    • 0
    updated Nov 24, 2021
  • small circuits function updated
    !9 · created Nov 24, 2021 by Devrim Gunyel
    • CLOSED
    • 0
    updated Nov 24, 2021
  • small circuits function updated
    !8 · created Nov 24, 2021 by Devrim Gunyel
    • CLOSED
    • 0
    updated Nov 24, 2021
  • small circuits function updated
    !7 · created Nov 24, 2021 by Devrim Gunyel
    • CLOSED
    • 5
    updated Nov 24, 2021
  • corrected an error in the 'duplicate_ambiguous_effectors'
    !6 · created Oct 29, 2021 by Marek Ostaszewski
    • MERGED
    • 0
    updated Oct 29, 2021
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