Merge requests · Marek Ostaszewski / systems_biology_translators

updated conversion: handle non-graphical nodes and use recent header specification

!25 · created Jan 19, 2023 by Marek Ostaszewski
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updated Jan 19, 2023
NaviCell note processing

!24 · created Apr 29, 2022 by Marek Ostaszewski
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updated Apr 29, 2022
read/write formats harmonised

!23 · created Apr 05, 2022 by Marek Ostaszewski
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updated Apr 05, 2022
remove nonprintables and improve read

!22 · created Apr 04, 2022 by Marek Ostaszewski
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updated Apr 04, 2022
names in labels/tooltips

!21 · created Apr 04, 2022 by Marek Ostaszewski
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updated Apr 04, 2022
Rename file, update errors when adding missing effectors, split into core/functions

!20 · created Mar 18, 2022 by Marek Ostaszewski
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updated Mar 18, 2022
Indexing bug, now nodes rewired sequentially follwing while iterations

!19 · created Feb 01, 2022 by Marek Ostaszewski
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updated Feb 01, 2022
create graph functions modified, small updates on casq run

!18 · created Feb 01, 2022 by Marek Ostaszewski
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updated Feb 01, 2022
Update convert_from_sif.R

!17 · created Jan 28, 2022 by Marek Ostaszewski
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updated Jan 28, 2022
update the converter

!16 · created Jan 28, 2022 by Marek Ostaszewski
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updated Jan 28, 2022
reorganisation, convert_from_sif with a wrapper function

!15 · created Jan 28, 2022 by Marek Ostaszewski
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updated Jan 28, 2022
convert_from_sif for production, working for the submaps. created...

!14 · created Dec 06, 2021 by Devrim Gunyel
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updated Jan 28, 2022
working test with pdmap submaps application to hipathia

!13 · created Nov 25, 2021 by Devrim Gunyel
- CLOSED
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updated Dec 06, 2021
test_apply_hipathia modified for submaps. Each submap is a seperate input

!12 · created Nov 24, 2021 by Devrim Gunyel
- CLOSED
- 0
updated Nov 25, 2021
cleaning, sif format, verbose output

!11 · created Nov 24, 2021 by Marek Ostaszewski
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updated Nov 24, 2021
applying converted pdmap submaps to hipathia

!10 · created Nov 24, 2021 by Devrim Gunyel
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updated Nov 24, 2021
small circuits function updated

!9 · created Nov 24, 2021 by Devrim Gunyel
- CLOSED
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updated Nov 24, 2021
small circuits function updated

!8 · created Nov 24, 2021 by Devrim Gunyel
- CLOSED
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updated Nov 24, 2021
small circuits function updated

!7 · created Nov 24, 2021 by Devrim Gunyel
- CLOSED
- 5
updated Nov 24, 2021
corrected an error in the 'duplicate_ambiguous_effectors'

!6 · created Oct 29, 2021 by Marek Ostaszewski
- MERGED
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updated Oct 29, 2021